Transcript: ENST00000542587.1 LPAR2-003

Description

lysophosphatidic acid receptor 2 [Source:HGNC Symbol;Acc:3168]

Gene Synonyms

EDG-4, EDG4, LPA-2, LPA2

Location

Chromosome 19: 19,734,478-19,739,739 reverse strand.

About this transcript

This transcript has 6 exons, is annotated with 34 domains and features, is associated with 2843 variant alleles and maps to 438 oligo probes.

Gene

This transcript is a product of gene ENSG00000064547.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000542587.1	LPAR2-003	2546	351aa	ENSP00000443256.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS12407	K7EJJ9 K7ELJ6 K7ENG7 K7ER68 Q9HBW0	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000586703.1	LPAR2-001	1823	351aa	ENSP00000465280.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS12407	K7EJJ9 K7ELJ6 K7ENG7 K7ER68 Q9HBW0	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000407877.3	LPAR2-002	1791	351aa	ENSP00000384665.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS12407	K7EJJ9 K7ELJ6 K7ENG7 K7ER68 Q9HBW0	NM_004720.5	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000588461.1	LPAR2-006	609	20aa	ENSP00000466940.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7ENG7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000591042.1	LPAR2-008	585	80aa	ENSP00000468132.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7EJJ9 K7ELJ6 K7ENG7 K7ER68	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000588233.1	LPAR2-004	558	74aa	ENSP00000466112.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7EJJ9 K7ELJ6 K7ENG7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000592061.1	LPAR2-009	480	25aa	ENSP00000465206.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7EJJ9 K7ENG7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000589311.1	LPAR2-005	355	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000590629.1	LPAR2-007	595	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 6, Coding exons: 2, Transcript length: 2,546 bps, Translation length: 351 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9HBW0

CCDS

This transcript is a member of the Human CCDS set: CCDS12407

Version

ENST00000542587.1

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000460544 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000542587.1 LPAR2-003

Summary