Transcript: ENST00000056217.5 ARHGEF5-001

Description

Rho guanine nucleotide exchange factor (GEF) 5 [Source:HGNC Symbol;Acc:13209]

Gene Synonyms

GEF5, P60, TIM, TIM1

Location

About this transcript

This transcript has 15 exons, is annotated with 30 domains and features, is associated with 9814 variant alleles and maps to 1115 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000056217.5	ARHGEF5-001	5544	1597aa	ENSP00000056217.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS34771	H9XFB6 Q12774	NM_005435.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000474817.1	ARHGEF5-002	2968	797aa	ENSP00000418745.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B3KQX6	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000471847.2	ARHGEF5-005	1862	519aa	ENSP00000418227.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q12774	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000498580.1	ARHGEF5-004	771	181aa	ENSP00000417979.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J591	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 15, Coding exons: 14, Transcript length: 5,544 bps, Translation length: 1,597 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q12774

CCDS

This transcript is a member of the Human CCDS set: CCDS34771

Version

ENST00000056217.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000349981 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.