Transcript: ENST00000054666.6 VAMP3-001

Description

vesicle-associated membrane protein 3 [Source:HGNC Symbol;Acc:12644]

Gene Synonyms

CEB, SYB3

Location

About this transcript

This transcript has 5 exons, is annotated with 13 domains and features, is associated with 4499 variant alleles and maps to 477 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000054666.6	VAMP3-001	2205	100aa	ENSP00000054666.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS88	K7EKX0 Q15836 Q6FGG2	NM_004781.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000470357.1	VAMP3-002	954	72aa	ENSP00000465820.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7EKX0	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000487194.1	VAMP3-003	274	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 5, Transcript length: 2,205 bps, Translation length: 100 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q15836

CCDS

This transcript is a member of the Human CCDS set: CCDS88

Version

ENST00000054666.6

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000003625 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.