Transcript: ENST00000517776.1 SLC18A1-004

Description

solute carrier family 18 (vesicular monoamine transporter), member 1 [Source:HGNC Symbol;Acc:10934]

Gene Synonyms

CGAT, VAT1, VMAT1

Location

Chromosome 8: 20,002,370-20,040,636 reverse strand.

About this transcript

This transcript has 17 exons, is annotated with 23 domains and features, is associated with 23048 variant alleles and maps to 589 oligo probes.

Gene

This transcript is a product of gene ENSG00000036565.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000440926.1	SLC18A1-202	2956	525aa	ENSP00000387549.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS6013	P54219	NM_001135691.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000437980.1	SLC18A1-201	2822	472aa	ENSP00000413361.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS47815	P54219	NM_001142325.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000265808.7	SLC18A1-002	2770	493aa	ENSP00000265808.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS47814	P54219	NM_001142324.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000276373.5	SLC18A1-001	2753	525aa	ENSP00000276373.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS6013	P54219	NM_003053.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000519026.1	SLC18A1-003	1980	493aa	ENSP00000429664.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS47814	P54219	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000381608.4	SLC18A1-008	1419	472aa	ENSP00000371021.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS47815	P54219	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000522513.1	SLC18A1-005	952	258aa	ENSP00000428999.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E5RK12	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000517776.1	SLC18A1-004	2770	385aa	ENSP00000428001.1	Nonsense mediated decay		Q96GL6	-	-
ENST00000524272.1	SLC18A1-006	908	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000519171.1	SLC18A1-007	669	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 17, Coding exons: 12, Transcript length: 2,770 bps, Translation length: 385 residues

Version

ENST00000517776.1

Type

Nonsense mediated decay

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000375118 (version 1)

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Recent locations

Transcript: ENST00000517776.1 SLC18A1-004

Summary