Transcript: ENST00000554176.1 CYP46A1-004

Description

cytochrome P450, family 46, subfamily A, polypeptide 1 [Source:HGNC Symbol;Acc:2641]

Gene Synonyms

CP46, CYP46

Location

Chromosome 14: 100,172,334-100,193,637 forward strand.

About this transcript

This transcript has 10 exons, is annotated with 15 domains and features, is associated with 9277 variant alleles and maps to 344 oligo probes.

Gene

This transcript is a product of gene ENSG00000036530.4 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000261835.3	CYP46A1-001	2181	500aa	ENSP00000261835.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9954	B4DHP8 Q9Y6A2	NM_006668.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000554176.1	CYP46A1-004	2253	337aa	ENSP00000450553.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q8N2B0	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000423126.2	CYP46A1-201	1599	403aa	ENSP00000405779.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DHP8	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000380228.2	CYP46A1-003	1597	487aa	ENSP00000369577.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DHP8	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000556313.1	CYP46A1-006	682	164aa	ENSP00000451602.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YJI0	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000554611.1	CYP46A1-002	6609	96aa	ENSP00000451069.1	Nonsense mediated decay		G3V366	-	-
ENST00000554917.1	CYP46A1-005	622	51aa	ENSP00000452151.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000556822.1	CYP46A1-007	581	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 10, Coding exons: 10, Transcript length: 2,253 bps, Translation length: 337 residues

Version

ENST00000554176.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000413816 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000554176.1 CYP46A1-004

Summary