Transcript: ENST00000465601.1 CHPF2-004

Description

chondroitin polymerizing factor 2 [Source:HGNC Symbol;Acc:29270]

Gene Synonyms

CHSY3, CSGLCA-T, CSGLCAT, CSGlcA-T, CSGlcAT, ChSy-3, KIAA1402, chPF-2

Location

About this transcript

This transcript has 4 exons, is annotated with 4 domains and features, is associated with 1060 variant alleles and maps to 133 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000035307.2	CHPF2-001	3973	772aa	ENSP00000035307.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS34779	Q9P2E5	NM_019015.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000495645.1	CHPF2-002	2709	764aa	ENSP00000418914.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS64803	G5E9W2	NM_001284295.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000482173.1	CHPF2-003	548	90aa	ENSP00000419769.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JZF7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000465601.1	CHPF2-004	782	123aa	ENSP00000420204.1	Nonsense mediated decay		H7C5L5	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 4, Coding exons: 3, Transcript length: 782 bps, Translation length: 123 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENST00000465601.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000348844 (version 1)