Transcript: ENST00000338888.3 RUNX3-002

Description

runt-related transcription factor 3 [Source:HGNC Symbol;Acc:10473]

Gene Synonyms

AML2, CBFA3, PEBP2A3, PEBP2aC

Location

Chromosome 1: 25,227,520-25,291,475 reverse strand.

About this transcript

This transcript has 7 exons, is annotated with 21 domains and features, is associated with 28964 variant alleles and maps to 493 oligo probes.

Gene

This transcript is a product of gene ENSG00000020633.14 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000399916.1	RUNX3-201	4340	429aa	ENSP00000382800.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS30633	Q13761	NM_001031680.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000308873.6	RUNX3-001	3861	415aa	ENSP00000308051.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS257	Q13761	NM_004350.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000338888.3	RUNX3-002	2629	429aa	ENSP00000343477.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS30633	Q13761	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000540420.1	RUNX3-202	1392	322aa	ENSP00000444872.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H4J4	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000496967.1	RUNX3-004	572	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000479341.1	RUNX3-003	284	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 7, Coding exons: 6, Transcript length: 2,629 bps, Translation length: 429 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q13761

CCDS

This transcript is a member of the Human CCDS set: CCDS30633

Version

ENST00000338888.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000009285 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000338888.3 RUNX3-002

Summary