Transcript: ENST00000482590.1 CLK1-010

Description

CDC-like kinase 1 [Source:HGNC Symbol;Acc:2068]

Gene Synonyms

CLK, CLK/STY, STY

Location

Chromosome 2: 201,726,055-201,729,381 reverse strand.

About this transcript

This transcript has 2 exons, is associated with 1995 variant alleles and maps to 205 oligo probes.

Gene

This transcript is a product of gene ENSG00000013441.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000434813.2	CLK1-007	2026	526aa	ENSP00000394734.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS54427	P49759	NM_001162407.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000321356.4	CLK1-001	1888	484aa	ENSP00000326830.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS2331	P49759	NM_004071.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000409769.2	CLK1-005	1192	307aa	ENSP00000386358.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B8ZZR0	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000432425.1	CLK1-003	1682	136aa	ENSP00000400487.1	Nonsense mediated decay		P49759	-	-
ENST00000409403.2	CLK1-006	1664	355aa	ENSP00000386875.2	Nonsense mediated decay		F8WBF5	-	-
ENST00000492793.1	CLK1-011	596	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000473565.1	CLK1-004	3208	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000461981.1	CLK1-002	3173	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000481641.1	CLK1-012	690	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000482590.1	CLK1-010	626	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000464454.1	CLK1-016	484	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000496205.1	CLK1-014	480	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000472679.1	CLK1-015	461	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000461326.1	CLK1-013	435	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 626 bps,

Version

ENST00000482590.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000336146 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000482590.1 CLK1-010

Summary