Transcript: ENST00000231751.4 LTF-001

Description

lactotransferrin [Source:HGNC Symbol;Acc:6720]

Gene Synonyms

GIG12, HEL110, HLF2, LF

Location

Chromosome 3: 46,477,136-46,506,653 reverse strand.

About this transcript

This transcript has 17 exons, is annotated with 37 domains and features, is associated with 13945 variant alleles and maps to 696 oligo probes.

Gene

This transcript is a product of gene ENSG00000012223.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000231751.4	LTF-001	2979	710aa	ENSP00000231751.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS33747	A8K9U8 C9J0S5 P02788	NM_002343.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000443496.1	LTF-002	2656	696aa	ENSP00000397427.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J0S5 E7EQB2	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000426532.2	LTF-201	2494	666aa	ENSP00000405719.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS56251	C9J0S5 P02788	NM_001199149.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000417439.1	LTF-003	2130	708aa	ENSP00000405546.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J0S5 E7ER44	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000415180.1	LTF-006	684	122aa	ENSP00000400254.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J0S5	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000431944.1	LTF-005	584	182aa	ENSP00000395234.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J0S5 C9JCF5	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000493056.1	LTF-008	493	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000498301.1	LTF-004	469	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000478874.2	LTF-007	466	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000462667.1	LTF-009	523	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 17, Coding exons: 17, Transcript length: 2,979 bps, Translation length: 710 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P02788

CCDS

This transcript is a member of the Human CCDS set: CCDS33747

Version

ENST00000231751.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000343951 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000231751.4 LTF-001

Summary