Transcript: ENST00000541739.2 SLC13A2-006

Description

solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2 [Source:HGNC Symbol;Acc:10917]

Gene Synonyms

NADC1, NaCT, NaDC-1, SDCT1

Location

Chromosome 17: 26,800,756-26,821,094 forward strand.

About this transcript

This transcript has 6 exons, is associated with 9121 variant alleles and maps to 341 oligo probes.

Gene

This transcript is a product of gene ENSG00000007216.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000444914.3	SLC13A2-002	2855	641aa	ENSP00000392411.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS54098	-	NM_001145975.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000314669.5	SLC13A2-001	2711	592aa	ENSP00000316202.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11231	Q13183	NM_003984.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000537681.1	SLC13A2-201	2466	521aa	ENSP00000440802.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		G3V1L2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000545060.1	SLC13A2-202	2226	549aa	ENSP00000441935.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5GWV6	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000459818.2	SLC13A2-005	2466	27aa	ENSP00000464074.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000579281.1	SLC13A2-004	2320	27aa	ENSP00000463421.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000577903.1	SLC13A2-003	2217	35aa	ENSP00000463457.1	Nonsense mediated decay		J3QLA5	-	-
ENST00000541739.2	SLC13A2-006	1230	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 6, Coding exons: 0, Transcript length: 1,230 bps,

Version

ENST00000541739.2

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000445704 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000541739.2 SLC13A2-006

Summary