Transcript: ENST00000397193.3 PAFAH1B1-012

Description

platelet-activating factor acetylhydrolase 1b, regulatory subunit 1 (45kDa) [Source:HGNC Symbol;Acc:8574]

Gene Synonyms

LIS1, LIS2, MDCR, MDS, PAFAH, PAFAHA

Location

Chromosome 17: 2,570,588-2,585,332 forward strand.

About this transcript

This transcript has 7 exons, is associated with 7343 variant alleles and maps to 410 oligo probes.

Gene

This transcript is a product of gene ENSG00000007168.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000397195.5	PAFAH1B1-001	5497	410aa	ENSP00000380378.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS32528	B4DZN3 I3L495 P43034	NM_000430.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000574468.1	PAFAH1B1-004	1021	208aa	ENSP00000460591.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DF38 I3L3N5	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000451360.2	PAFAH1B1-201	1021	205aa	ENSP00000395628.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DF38	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000576586.1	PAFAH1B1-011	557	82aa	ENSP00000461087.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		I3L495	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000570400.1	PAFAH1B1-008	661	14aa	ENSP00000460258.1	Nonsense mediated decay		-	-	-
ENST00000572915.2	PAFAH1B1-003	1361	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000397193.3	PAFAH1B1-012	1277	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000575477.1	PAFAH1B1-005	694	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000574816.1	PAFAH1B1-010	662	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000574213.1	PAFAH1B1-007	634	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000609078.1	PAFAH1B1-014	570	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000571495.1	PAFAH1B1-006	1503	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000610190.1	PAFAH1B1-013	650	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000571289.1	PAFAH1B1-009	589	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 7, Coding exons: 0, Transcript length: 1,277 bps,

Version

ENST00000397193.3

Type

Processed transcript

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000437803 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000397193.3 PAFAH1B1-012

Summary