Transcript: ENST00000297029.5 SCIN-001

Description

scinderin [Source:HGNC Symbol;Acc:21695]

Gene Synonyms

KIAA1905, adseverin

Location

Chromosome 7: 12,610,312-12,693,228 forward strand.

About this transcript

This transcript has 16 exons, is annotated with 35 domains and features, is associated with 40930 variant alleles and maps to 574 oligo probes.

Gene

This transcript is a product of gene ENSG00000006747.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000297029.5	SCIN-001	3137	715aa	ENSP00000297029.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS47545	Q75MG0 Q8NBV9 Q9Y6U3	NM_001112706.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000519209.1	SCIN-008	2660	468aa	ENSP00000430997.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS47546	Q75MG0 Q8NBV9 Q9Y6U3	NM_033128.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000445618.2	SCIN-201	2518	468aa	ENSP00000390189.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS47546	Q75MG0 Q8NBV9 Q9Y6U3	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000523729.1	SCIN-010	585	108aa	ENSP00000429598.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E5RHN8 E5RHX6	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000417018.1	SCIN-007	549	160aa	ENSP00000404380.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JGB6	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000518849.1	SCIN-009	536	91aa	ENSP00000428555.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E5RHN8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000341757.5	SCIN-002	2569	580aa	ENSP00000341375.5	Nonsense mediated decay		Q9Y6U3	-	-
ENST00000436854.1	SCIN-006	570	102aa	ENSP00000411149.1	Nonsense mediated decay		F8WBX5	-	-
ENST00000473722.1	SCIN-004	656	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000486980.1	SCIN-005	558	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000476649.1	SCIN-003	969	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 16, Coding exons: 16, Transcript length: 3,137 bps, Translation length: 715 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9Y6U3

CCDS

This transcript is a member of the Human CCDS set: CCDS47545

Version

ENST00000297029.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000326041 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000297029.5 SCIN-001

Summary