Transcript: ENST00000225245.5 CCL3-001

Description

chemokine (C-C motif) ligand 3 [Source:HGNC Symbol;Acc:10627]

Gene Synonyms

G0S19-1, LD78ALPHA, MIP-1-alpha, MIP1A, SCYA3

Location

About this transcript

This transcript has 3 exons, is annotated with 8 domains and features, is associated with 1037 variant alleles and maps to 529 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000225245.5	CCL3-001	778	92aa	ENSP00000225245.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11307	A0N0R1 P10147	NM_002983.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000470334.1	CCL3-002	1494	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000585830.1	CCL3-003	1117	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 3, Transcript length: 778 bps, Translation length: 92 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P10147

CCDS

This transcript is a member of the Human CCDS set: CCDS11307

Version

ENST00000225245.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000256581 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.