Transcript: ENST00000569773.1 GDE1-003

Description

glycerophosphodiester phosphodiesterase 1 [Source:HGNC Symbol;Acc:29644]

Gene Synonyms

363E6.2, MIR16

Location

About this transcript

This transcript has 4 exons, is annotated with 6 domains and features, is associated with 5416 variant alleles and maps to 128 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000353258.3	GDE1-001	2954	331aa	ENSP00000261386.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS10578	Q9NZC3	NM_016641.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000569899.1	GDE1-004	1618	129aa	ENSP00000456295.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BNA5 H3BRL5	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000569773.1	GDE1-003	739	102aa	ENSP00000454755.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BNA5	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000564172.1	GDE1-002	2238	108aa	ENSP00000457431.1	Nonsense mediated decay		H3BU22	-	-
ENST00000563645.1	GDE1-005	769	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 3, Transcript length: 739 bps, Translation length: 102 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENST00000569773.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000435982 (version 1)