Transcript: ENST00000413852.1 SEMA3F-004

Description

sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F [Source:HGNC Symbol;Acc:10728]

Gene Synonyms

SEMA-IV, SEMA4, SEMAK, Sema4

Location

Chromosome 3: 50,192,524-50,226,507 forward strand.

About this transcript

This transcript has 18 exons, is annotated with 17 domains and features, is associated with 14912 variant alleles and maps to 687 oligo probes.

Gene

This transcript is a product of gene ENSG00000001617.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000002829.3	SEMA3F-001	3802	785aa	ENSP00000002829.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS2811	Q13275	NM_004186.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000434342.1	SEMA3F-002	3541	754aa	ENSP00000409859.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J1V2 C9J4H5 C9JPG5 Q13275	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000413852.1	SEMA3F-004	3212	686aa	ENSP00000388931.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JPG5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000450338.1	SEMA3F-003	1693	379aa	ENSP00000398399.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J1V2 C9J4H5	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000414301.1	SEMA3F-005	936	264aa	ENSP00000392588.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J1V2	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000426511.1	SEMA3F-006	757	92aa	ENSP00000400549.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9IYS6	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000420831.1	SEMA3F-010	442	147aa	ENSP00000416356.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H7C4A2	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000470737.1	SEMA3F-009	566	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000493743.1	SEMA3F-008	520	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 18, Coding exons: 16, Transcript length: 3,212 bps, Translation length: 686 residues

Version

ENST00000413852.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000345962 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000413852.1 SEMA3F-004

Summary