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Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Paralogues
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: LSM4 ENSG00000130520

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Description

LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae) [Source:HGNC Symbol;Acc:17259]

Gene Synonyms

GRP, YER112W

Location

Chromosome 19: 18,417,040-18,434,084 reverse strand.

GRCh37:CM000681.1

About this gene

This gene has 6 transcripts (splice variants).

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000593829.1	LSM4-001	1908	139aa	ENSP00000469468.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS12374	Q9Y4Z0 U3KQK1	NM_012321.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000252816.6	LSM4-006	986	125aa	ENSP00000475950.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS62601	U3KQK1	NM_001252129.1	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000594828.3	LSM4-004	807	238aa	ENSP00000477443.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000597776.1	LSM4-005	446	109aa	ENSP00000476184.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		U3KQS7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000600289.2	LSM4-003	1113	69aa	ENSP00000469028.1	Nonsense mediated decay		M0QXB0	-	-
ENST00000593564.2	LSM4-002	656	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

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Summary

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