Gene: LSM4 ENSG00000130520

Description

LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae) [Source:HGNC Symbol;Acc:17259]

Gene Synonyms

GRP, YER112W

Location

Chromosome 19: 18,417,040-18,434,084 reverse strand.

GRCh37:CM000681.1

About this gene

This gene has 6 transcripts (splice variants).

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000593829.1	LSM4-001	1908	139aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS12374	Q9Y4Z0 U3KQK1	NM_012321.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000252816.6	LSM4-006	986	125aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS62601	U3KQK1	NM_001252129.1	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000594828.3	LSM4-004	807	238aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000597776.1	LSM4-005	446	109aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding		U3KQS7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000600289.2	LSM4-003	1113	69aa	Nonsense mediated decay		M0QXB0	-	-
ENST00000593564.2	LSM4-002	656	No protein	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Name

LSM4 (HGNC Symbol)

UniProtKB

This gene has proteins that correspond to the following UniProtKB identifiers: Q9Y4Z0

CCDS

This gene is a member of the Human CCDS set: CCDS12374.1, CCDS62601.1

Ensembl version

ENSG00000130520.6

Other assemblies

This gene maps to 18,306,230-18,323,274 in GRCh38 coordinates.

Gene type

Protein coding

Annotation method

Annotation for this gene includes both automatic annotation from Ensembl and Havana manual curation, see article.

Alternative genes

This gene corresponds to the following database identifiers:

Havana gene:	OTTHUMG00000183357 (version 9)

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Gene: LSM4 ENSG00000130520

Summary