Description
chromodomain helicase DNA binding protein 9 [Source:HGNC Symbol;Acc:25701]
Gene Synonyms
AD013, BC022889, CReMM, FLJ12178, KIAA0308, KISH2, PRIC320
Location
Chromosome 16: 53,088,945-53,363,062 forward strand.
GRCh37:CM000678.1
About this gene
This gene has 20 transcripts (splice variants) and 8 paralogues.
Transcripts
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|---|
| ENST00000566029.1 | CHD9-001 | 13110 | 2881aa | ENSP00000457466.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS45485 | H3BRU9 H3BSP3 H3BV31 Q3L8U1 | - | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000564845.1 | CHD9-003 | 11504 | 2881aa | ENSP00000455307.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS45485 | H3BRU9 H3BSP3 H3BV31 Q3L8U1 | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000447540.1 | CHD9-201 | 11464 | 2882aa | ENSP00000396345.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | H3BRU9 H3BSP3 H3BV31 Q3L8U1 | NM_025134.4 | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, | |
| ENST00000398510.3 | CHD9-020 | 11337 | 2897aa | ENSP00000381522.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | H3BRU9 H3BSP3 H3BV31 Q3L8U1 | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, | |
| ENST00000565803.1 | CHD9-004 | 3625 | 1098aa | ENSP00000457355.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | B4DR07 H3BRU9 H3BTW3 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000565832.1 | CHD9-002 | 2169 | 632aa | ENSP00000456793.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | H3BRU9 H3BSP3 H3BV31 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000565442.1 | CHD9-012 | 703 | 125aa | ENSP00000456415.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | H3BRU9 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000563410.1 | CHD9-010 | 488 | 53aa | ENSP00000457929.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | H3BV31 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000562785.1 | CHD9-011 | 359 | 91aa | ENSP00000460155.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | I3L340 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000564641.1 | CHD9-018 | 589 | 113aa | ENSP00000462008.1 | Nonsense mediated decay | - | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, | |
| ENST00000564600.2 | CHD9-017 | 539 | 122aa | ENSP00000462685.1 | Nonsense mediated decay | - | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, | |
| ENST00000564582.1 | CHD9-009 | 964 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000565119.1 | CHD9-015 | 824 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000561869.1 | CHD9-008 | 720 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000569794.1 | CHD9-013 | 485 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000562791.1 | CHD9-014 | 242 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000219084.6 | CHD9-019 | 8739 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000564255.1 | CHD9-006 | 2896 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000569225.1 | CHD9-005 | 1862 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000562806.1 | CHD9-016 | 400 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - |
