Gene: FTO ENSG00000140718

Description

fat mass and obesity associated [Source:HGNC Symbol;Acc:24678]

Gene Synonyms

ALKBH9, KIAA1752, MGC5149

Location

Chromosome 16: 53,737,875-54,155,853 forward strand.

GRCh37:CM000678.1

About this gene

This gene has 9 transcripts (splice variants) and is associated with 4 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000471389.1	FTO-001	11766	505aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS32448	B4DHN4 Q9C0B1	NM_001080432.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000463855.1	FTO-005	3056	127aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q9C0B1	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000268349.7	FTO-008	2799	129aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000460382.1	FTO-002	1517	106aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q9C0B1	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000394647.3	FTO-201	1065	209aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DHN4	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000431610.2	FTO-006	707	106aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q9C0B1	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000464071.1	FTO-003	1065	70aa	Nonsense mediated decay		F8WCB8	-	-
ENST00000472835.1	FTO-007	847	No protein	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000570395.1	FTO-009	555	No protein	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Name

FTO (HGNC Symbol)

UniProtKB

This gene has proteins that correspond to the following UniProtKB identifiers: Q9C0B1

CCDS

This gene is a member of the Human CCDS set: CCDS32448.1

Ensembl version

ENSG00000140718.14

Other assemblies

This gene maps to 53,703,963-54,121,941 in GRCh38 coordinates.

Gene type

Protein coding

Annotation method

Annotation for this gene includes both automatic annotation from Ensembl and Havana manual curation, see article.

Alternative genes

This gene corresponds to the following database identifiers:

Havana gene:	OTTHUMG00000158780 (version 4)

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Gene: FTO ENSG00000140718

Summary