Description
histone deacetylase 9 [Source:HGNC Symbol;Acc:14065]
Gene Synonyms
HD7, HD7b, HD9, HDAC, HDAC7, HDAC7B, HDAC9B, HDAC9FL, HDRP, KIAA0744, MITR
Location
Chromosome 7: 18,126,572-19,042,039 forward strand.
GRCh37:CM000669.1
About this gene
This gene has 28 transcripts (splice variants) and 5 paralogues.
Transcripts
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|---|
| ENST00000441542.2 | HDAC9-021 | 3210 | 1069aa | ENSP00000408617.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS47553 | C9IZS0 C9J1W4 C9J835 C9JLX1 Q75N10 Q75N14 Q75N15 Q8N926 Q9UKV0 | NM_178425.2 | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000406451.4 | HDAC9-001 | 9705 | 1066aa | ENSP00000384657.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS47554 | C9JD56 C9JLX1 Q75N08 Q75N10 Q75N14 Q75N15 Q8N926 Q9UKV0 | NM_178423.1 | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000405010.3 | HDAC9-002 | 4239 | 590aa | ENSP00000384382.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS47557 | C9JD56 C9JLX1 Q75N08 Q75N14 Q75N15 Q75N16 Q9UKV0 | NM_014707.1 | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000406072.1 | HDAC9-004 | 4102 | 577aa | ENSP00000384017.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | B5MCF1 B7Z3P7 C9IZS0 C9J1W4 C9J835 C9JLX1 | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, | |
| ENST00000401921.1 | HDAC9-017 | 3254 | 1025aa | ENSP00000383912.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C9IZS0 C9J1W4 C9J835 C9JLX1 Q75N10 Q8N926 Q9UKV0 | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, | |
| ENST00000432645.2 | HDAC9-023 | 3099 | 1011aa | ENSP00000410337.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS47555 | C9JD56 C9JLX1 Q75N08 Q75N10 Q75N14 Q75N15 Q9UKV0 | NM_058176.2 | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000417496.2 | HDAC9-005 | 2524 | 588aa | ENSP00000401669.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS56465 | C9JD56 C9JLX1 Q75N08 Q9UKV0 | NM_001204144.1 | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000428307.2 | HDAC9-025 | 2359 | 546aa | ENSP00000395655.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS56466 | C9JD56 C9JLX1 Q75N08 Q9UKV0 | NM_001204146.1 | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000456174.2 | HDAC9-015 | 2307 | 562aa | ENSP00000388568.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS56467 | C9J835 Q75N14 Q75N15 Q75N16 Q9UKV0 | NM_001204148.1 | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000524023.1 | HDAC9-022 | 2199 | 513aa | ENSP00000430036.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS56468 | C9JD56 Q9UKV0 | NM_001204147.1 | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000413380.1 | HDAC9-011 | 799 | 148aa | ENSP00000392564.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C9IZS0 C9J1W4 C9J835 C9JLX1 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000433709.2 | HDAC9-006 | 602 | 22aa | ENSP00000409003.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C9JLX1 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000441986.1 | HDAC9-013 | 584 | 110aa | ENSP00000404763.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C9JD56 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000413509.2 | HDAC9-008 | 550 | 138aa | ENSP00000412497.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C9IZS0 C9J835 C9JLX1 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000430454.1 | HDAC9-010 | 545 | 70aa | ENSP00000411422.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C9J835 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000446646.1 | HDAC9-012 | 560 | 38aa | ENSP00000415095.1 | Nonsense mediated decay | F8WDS2 | - | - | |
| ENST00000476135.1 | HDAC9-003 | 1115 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000496026.1 | HDAC9-018 | 860 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000461409.1 | HDAC9-009 | 728 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000411993.1 | HDAC9-026 | 626 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000474742.1 | HDAC9-007 | 551 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000425071.1 | HDAC9-027 | 471 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000471887.1 | HDAC9-014 | 446 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000483142.1 | HDAC9-019 | 305 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000523867.1 | HDAC9-024 | 2640 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000461159.2 | HDAC9-016 | 2557 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000490851.1 | HDAC9-020 | 2419 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000455069.1 | HDAC9-028 | 553 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - |
