Description
CD44 molecule (Indian blood group) [Source:HGNC Symbol;Acc:1681]
Gene Synonyms
CD44R, CDW44, CSPG8, ECMR-III, HCELL, HUTCH-I, IN, LHR, MC56, MDU2, MDU3, MIC4, Pgp1
Location
Chromosome 11: 35,160,417-35,253,949 forward strand.
GRCh37:CM000673.1
About this gene
This gene has 42 transcripts (splice variants), 1 paralogue and is associated with 1 phenotype.
Transcripts
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|---|
| ENST00000428726.2 | CD44-001 | 3046 | 742aa | ENSP00000398632.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS7897 | B4XHE2 C0STK4 C1PHC3 C1PHC4 C1PHE6 E9PKC6 P16070 | NM_000610.3 | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000263398.6 | CD44-003 | 4589 | 361aa | ENSP00000263398.6 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS31457 | C0STK4 C1PHC3 C1PHC4 E9PKC6 P16070 | NM_001202556.1 | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000433354.2 | CD44-202 | 2414 | 714aa | ENSP00000414567.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | B4XHE2 C0STK4 C1PHC3 C1PHC4 C1PHE6 E7EPC6 E9PKC6 | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, | |
| ENST00000415148.2 | CD44-004 | 2369 | 699aa | ENSP00000389830.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS31455 | B4XHE2 C0STK4 C1PHC3 C1PHC4 C1PHE6 E9PKC6 P16070 | NM_001001389.1 | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000449691.2 | CD44-204 | 2369 | 699aa | ENSP00000391008.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | B4XHE2 C0STK4 C1PHC3 C1PHC4 C1PHE6 E9PKC6 P16070 | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, | |
| ENST00000437706.2 | CD44-203 | 2294 | 674aa | ENSP00000403990.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | B4XHE2 C0STK4 C1PHC3 C1PHC4 C1PHE6 E9PKC6 P16070 | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, | |
| ENST00000433892.2 | CD44-005 | 2292 | 493aa | ENSP00000392331.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS31456 | C0STK4 C1PHC3 C1PHC4 E9PKC6 P16070 | NM_001001390.1 | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000442151.2 | CD44-006 | 1825 | 294aa | ENSP00000398099.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C0STK4 C1PHC3 C1PHC4 | NM_001202557.1 | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, | |
| ENST00000434472.2 | CD44-008 | 1634 | 429aa | ENSP00000404447.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS55754 | C0STK4 C1PHC3 C1PHC4 E9PKC6 P16070 | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000360158.4 | CD44-201 | 1460 | 396aa | ENSP00000353280.4 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C0STK4 C1PHC3 C1PHC4 E9PKC6 P16070 | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, | |
| ENST00000526025.1 | CD44-011 | 1052 | 78aa | ENSP00000435377.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C1PHC3 E9PKC6 | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, | |
| ENST00000352818.4 | CD44-007 | 1023 | 340aa | ENSP00000309732.6 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS55755 | C0STK4 C1PHC3 C1PHC4 E9PKC6 P16070 | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000526669.2 | CD44-019 | 870 | 206aa | ENSP00000432704.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C1PHC3 E9PKC6 H0YD13 | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, | |
| ENST00000279452.6 | CD44-024 | 862 | 287aa | ENSP00000279452.6 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C0STK4 C1PHC4 H0Y2P0 | - | 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete, | |
| ENST00000531110.1 | CD44-039 | 749 | 249aa | ENSP00000436549.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | H0YEU1 | - | 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete, | |
| ENST00000525211.1 | CD44-033 | 747 | 249aa | ENSP00000432405.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C0STK4 C1PHC3 C1PHC4 H0YCV9 | - | 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete, | |
| ENST00000525685.1 | CD44-028 | 728 | 243aa | ENSP00000436623.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | B4XHE2 | - | 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete, | |
| ENST00000526000.1 | CD44-040 | 722 | 240aa | ENSP00000434465.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C0STK4 C1PHC3 C1PHC4 H0YDW7 | - | 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete, | |
| ENST00000525469.1 | CD44-015 | 705 | 82aa | ENSP00000434920.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | H0YE40 | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, | |
| ENST00000278385.6 | CD44-032 | 697 | 232aa | ENSP00000278385.6 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | J3KN83 | - | 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete, | |
| ENST00000528455.1 | CD44-035 | 687 | 229aa | ENSP00000432718.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C0STK4 C1PHC4 C1PHE6 | - | 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete, | |
| ENST00000528672.1 | CD44-037 | 586 | 195aa | ENSP00000431860.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | H0YCL4 | - | 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete, | |
| ENST00000531873.1 | CD44-030 | 584 | 195aa | ENSP00000433189.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C0STK4 | - | 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete, | |
| ENST00000533222.1 | CD44-034 | 581 | 193aa | ENSP00000435321.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | B4XHE2 H0YEA1 | - | 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete, | |
| ENST00000526553.1 | CD44-041 | 571 | 191aa | ENSP00000434418.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | - | 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete, | |
| ENST00000525688.1 | CD44-036 | 560 | 186aa | ENSP00000436980.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | B4XHE2 H0YF08 | - | 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete, | |
| ENST00000527889.1 | CD44-038 | 543 | 181aa | ENSP00000434530.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C0STK4 C1PHC4 | - | 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete, | |
| ENST00000278386.6 | CD44-002 | 484 | 139aa | ENSP00000278386.6 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS31458 | C1PHC3 P16070 | NM_001001392.1 | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000524922.1 | CD44-026 | 352 | 118aa | ENSP00000436451.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | - | 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete, | |
| ENST00000425428.2 | CD44-009 | 1768 | 80aa | ENSP00000395953.2 | Nonsense mediated decay | C1PHC3 Q86UZ1 | - | - | |
| ENST00000528922.1 | CD44-025 | 1319 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000528086.1 | CD44-012 | 580 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000525209.1 | CD44-023 | 574 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000531118.1 | CD44-018 | 877 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000534296.1 | CD44-021 | 863 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000527326.1 | CD44-014 | 718 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000532339.1 | CD44-016 | 589 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000525293.1 | CD44-027 | 569 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000525348.1 | CD44-017 | 568 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000534082.1 | CD44-020 | 564 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000531141.1 | CD44-013 | 537 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000525241.1 | CD44-022 | 440 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - |
