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Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: PAX2 ENSG00000075891

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Description

paired box 2 [Source:HGNC Symbol;Acc:8616]

Gene Synonyms

PAPRS

Location

Chromosome 10: 102,495,360-102,589,698 forward strand.

GRCh37:CM000672.1

About this gene

This gene has 10 transcripts (splice variants), 8 paralogues and is associated with 7 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000428433.1	PAX2-202	4126	417aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS53569	Q02962 Q5SZP1	NM_003990.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000370296.2	PAX2-201	4209	419aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q02962 Q5SZP1	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000355243.3	PAX2-001	4056	394aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS41561	Q02962	NM_003989.3	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000361791.3	PAX2-002	3516	396aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS7499	Q02962	NM_003988.3	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000554172.1	PAX2-005	1748	303aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding		G3V5S4 Q6YFJ8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000556085.1	PAX2-006	1253	393aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding		G3V5U4	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000427256.1	PAX2-003	677	214aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5SZP1	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000554363.1	PAX2-007	582	35aa	Nonsense mediated decay		G3V5M8	-	-
ENST00000553492.1	PAX2-008	507	No protein	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000483202.2	PAX2-004	1216	No protein	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

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Summary

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