Gene: SLC46A1 ENSG00000076351

Description

solute carrier family 46 (folate transporter), member 1 [Source:HGNC Symbol;Acc:30521]

Gene Synonyms

G21, HCP1, MGC9564, PCFT

Location

Chromosome 17: 26,721,661-26,734,215 reverse strand.

GRCh37:CM000679.1

View alleles of this gene on alternative sequences

About this gene

This gene has 11 transcripts (splice variants), 1 gene allele, 2 paralogues and is associated with 4 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Biotype	UniProt Match	RefSeq	Flags
ENST00000440501.1	SLC46A1-202	6487	459aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	J3KTE6 J3QRF7 K7EPJ7 Q96NT5	NM_080669.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000321666.5	SLC46A1-201	6400	430aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	C9JSZ2 J3KTE6 J3QRF7 K7EPJ7	NM_001242366.1	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000584995.1	SLC46A1-006	1030	250aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	J3KTE6 J3QRF7 K7EPJ7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000581516.1	SLC46A1-005	844	32aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	J3KTE6	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000582735.1	SLC46A1-008	574	124aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000584426.1	SLC46A1-011	564	128aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	K7EPJ7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000584729.1	SLC46A1-001	6374	No protein	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-	-
ENST00000583295.1	SLC46A1-002	5361	No protein	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-	-
ENST00000578217.1	SLC46A1-007	596	No protein	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-	-
ENST00000582590.1	SLC46A1-004	1435	No protein	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-	-
ENST00000582345.1	SLC46A1-009	530	No protein	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-	-

Summary

Name

SLC46A1 (HGNC Symbol)

UniProtKB

This gene has proteins that correspond to the following UniProtKB identifiers: Q96NT5

LRG

LRG_183 provides a stable genomic reference framework for describing sequence variants for this gene

Ensembl version

ENSG00000076351.8

Other assemblies

There is no ungapped mapping of this gene onto the GRCh38 assembly.

Gene type

Protein coding

Annotation method

Annotation for this gene includes both automatic annotation from Ensembl and Havana manual curation, see article.

Alternative genes

This gene corresponds to the following database identifiers:

Havana gene:	OTTHUMG00000179415 (version 2)

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Gene: SLC46A1 ENSG00000076351

Summary