Gene: PTPN13 ENSG00000163629

Description

protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase) [Source:HGNC Symbol;Acc:9646]

Gene Synonyms

FAP-1, PNP1, PTP-BAS, PTP-BL, PTP1E, PTPL1, PTPLE, hPTP1E

Location

Chromosome 4: 87,515,468-87,736,324 forward strand.

GRCh37:CM000666.1

About this gene

This gene has 9 transcripts (splice variants), 3 paralogues and is associated with 71 phenotypes.

Transcripts

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Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000436978.1	PTPN13-201	8573	2490aa	ENSP00000394794.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS47093	D6R9X4 Q12923 Q4W5F5	NM_080685.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000427191.2	PTPN13-001	8487	2466aa	ENSP00000408368.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS47095	D6R9X4 Q12923	NM_006264.2	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000411767.2	PTPN13-003	8119	2485aa	ENSP00000407249.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS47094	D6R9X4 Q12923	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000511467.1	PTPN13-005	8076	2490aa	ENSP00000426626.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS47093	D6R9X4 Q12923 Q4W5F5	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000316707.6	PTPN13-002	7546	2294aa	ENSP00000322675.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS47096	D6R9X4 Q12923	NM_080684.2	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000502971.1	PTPN13-006	1708	227aa	ENSP00000423531.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6R9M4 D6R9X4	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000507902.1	PTPN13-008	516	139aa	ENSP00000422835.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6R9X4	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000511105.1	PTPN13-010	645	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000508063.1	PTPN13-009	457	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

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Gene: PTPN13 ENSG00000163629

Summary