Description
contactin 4 [Source:HGNC Symbol;Acc:2174]
Gene Synonyms
AXCAM, BIG-2
Location
Chromosome 3: 2,140,497-3,099,645 forward strand.
GRCh37:CM000665.1
About this gene
This gene has 19 transcripts (splice variants) and 17 paralogues.
Transcripts
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|---|
| ENST00000397461.1 | CNTN4-001 | 5198 | 1026aa | ENSP00000380602.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS43041 | C9JGK9 C9JMQ2 G3XAD4 Q8IWV2 | NM_001206955.1 | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000418658.1 | CNTN4-009 | 5093 | 1026aa | ENSP00000396010.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS43041 | C9JGK9 C9JMQ2 G3XAD4 Q8IWV2 | NM_175607.2 | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000427331.1 | CNTN4-202 | 4985 | 1026aa | ENSP00000413642.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS43041 | C9JGK9 C9JMQ2 G3XAD4 Q8IWV2 | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000358480.3 | CNTN4-201 | 2846 | 807aa | ENSP00000351267.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | G3XAD4 | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, | |
| ENST00000397459.2 | CNTN4-002 | 2322 | 698aa | ENSP00000380600.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS2558 | Q8IWV2 | NM_175613.2 | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000448906.2 | CNTN4-203 | 2279 | 698aa | ENSP00000392077.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS2558 | Q8IWV2 | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000473845.1 | CNTN4-015 | 726 | 143aa | ENSP00000422120.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | H0Y8U1 | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, | |
| ENST00000422330.1 | CNTN4-004 | 658 | 116aa | ENSP00000408594.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C9JGK9 C9JMQ2 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000455083.1 | CNTN4-005 | 566 | 54aa | ENSP00000390560.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C9JGK9 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000434053.1 | CNTN4-011 | 528 | 137aa | ENSP00000404085.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C9JIY1 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000427741.1 | CNTN4-003 | 3040 | 232aa | ENSP00000396719.1 | Nonsense mediated decay | C9JGK9 C9JMQ2 F8WD58 | - | - | |
| ENST00000475817.1 | CNTN4-017 | 614 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000473058.1 | CNTN4-013 | 568 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000490876.1 | CNTN4-007 | 551 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000484686.1 | CNTN4-016 | 3064 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000430505.2 | CNTN4-010 | 2637 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000438282.2 | CNTN4-006 | 2463 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000480113.1 | CNTN4-012 | 575 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000473173.1 | CNTN4-014 | 565 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - |
