Description
retinol dehydrogenase 11 (all-trans/9-cis/11-cis) [Source:HGNC Symbol;Acc:17964]
Gene Synonyms
ARSDR1, CGI82, HCBP12, MDT1, PSDR1, RALR1, SCALD, SDR7C1
Location
Chromosome 14: 68,143,518-68,162,531 reverse strand.
GRCh37:CM000676.1
About this gene
This gene has 11 transcripts (splice variants), 8 paralogues and is associated with 2 phenotypes.
Transcripts
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|---|
| ENST00000381346.4 | RDH11-001 | 2588 | 318aa | ENSP00000370750.4 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS32104 | B3KQ19 Q0QD40 Q8TC12 | NM_016026.3 | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000553384.1 | RDH11-003 | 1926 | 305aa | ENSP00000452079.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | B3KQ19 Q8TC12 | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, | |
| ENST00000428130.2 | RDH11-004 | 1064 | 248aa | ENSP00000416395.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS58326 | Q8TC12 | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000554035.1 | RDH11-013 | 849 | 204aa | ENSP00000450802.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | H0YJ46 | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, | |
| ENST00000557726.1 | RDH11-010 | 621 | 186aa | ENSP00000450435.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | G3V234 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000557273.1 | RDH11-011 | 562 | 178aa | ENSP00000450651.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | G3V2G6 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000554731.1 | RDH11-009 | 888 | 61aa | ENSP00000451280.1 | Nonsense mediated decay | G3V3K0 | - | - | |
| ENST00000557331.1 | RDH11-008 | 553 | 62aa | ENSP00000452108.1 | Nonsense mediated decay | G3V510 | - | - | |
| ENST00000553578.1 | RDH11-006 | 4035 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000553816.1 | RDH11-012 | 1163 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000556692.1 | RDH11-007 | 801 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - |
