Gene: ABCA1 ENSG00000165029

Description

ATP-binding cassette, sub-family A (ABC1), member 1 [Source:HGNC Symbol;Acc:29]

Gene Synonyms

ABC-1, ABC1, CERP, HDLDT1, TGD

Location

GRCh37:CM000671.1

About this gene

This gene has 4 transcripts (splice variants), 11 paralogues and is associated with 6 phenotypes.

Transcripts

Transcript ID	Name	bp	Protein	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000374736.3	ABCA1-002	10494	2261aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS6762	O95477 Q9H002 Q9NP93 Q9NS76	NM_005502.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000423487.2	ABCA1-001	1540	363aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B1AMI2 Q9H002 Q9NP93 Q9NS76	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000374733.1	ABCA1-004	923	123aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B1AMI1	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000494467.1	ABCA1-003	807	No protein	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Name

ABCA1 (HGNC Symbol)

UniProtKB

This gene has proteins that correspond to the following UniProtKB identifiers: O95477

CCDS

This gene is a member of the Human CCDS set: CCDS6762.1

Ensembl version

ENSG00000165029.11

Other assemblies

This gene maps to 104,781,002-104,928,237 in GRCh38 coordinates.

Gene type

Protein coding

Annotation method

Annotation for this gene includes both automatic annotation from Ensembl and Havana manual curation, see article.

Alternative genes

This gene corresponds to the following database identifiers:

Havana gene:	OTTHUMG00000020417 (version 1)

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