Description
collagen, type IV, alpha 6 [Source:HGNC Symbol;Acc:2208]
Gene Synonyms
CXDELq22.3, DELXq22.3
Location
Chromosome X: 107,386,780-107,682,727 reverse strand.
GRCh37:CM000685.1
About this gene
This gene has 10 transcripts (splice variants), 17 paralogues and is associated with 2 phenotypes.
Transcripts
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|---|
| ENST00000372216.4 | COL4A6-001 | 6570 | 1691aa | ENSP00000361290.4 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS14541 | B4DU54 Q14031 | NM_001847.2 | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000334504.7 | COL4A6-002 | 6700 | 1690aa | ENSP00000334733.7 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS14542 | B4DU54 Q14031 | NM_033641.2 | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000394872.2 | COL4A6-201 | 6700 | 1691aa | ENSP00000378340.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A8MXH5 B4DU54 | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, | |
| ENST00000545689.1 | COL4A6-204 | 6086 | 1666aa | ENSP00000443707.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | B4DU54 F5H851 | NM_001287759.1 | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, | |
| ENST00000538570.1 | COL4A6-203 | 5987 | 1633aa | ENSP00000445236.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | B4DU54 F5H3Q5 | NM_001287760.1 | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, | |
| ENST00000418180.1 | COL4A6-202 | 1031 | 260aa | ENSP00000406002.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | B4DZ39 | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, | |
| ENST00000461897.1 | COL4A6-004 | 1889 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000477085.1 | COL4A6-003 | 1784 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000487645.1 | COL4A6-006 | 812 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000468338.1 | COL4A6-005 | 865 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - |
