Gene: CACNA1B ENSG00000148408

Description

calcium channel, voltage-dependent, N type, alpha 1B subunit [Source:HGNC Symbol;Acc:1389]

Gene Synonyms

BIII, CACH5, CACNL1A5, CACNN, Cav2.2

Location

Chromosome 9: 140,772,241-141,019,076 forward strand.

GRCh37:CM000671.1

About this gene

This gene has 11 transcripts (splice variants), 3 paralogues and is associated with 3 phenotypes.

Transcripts

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Transcript ID	Name	bp	Protein	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000371372.1	CACNA1B-001	9790	2339aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS59522	Q00975 Q9HAT4 Q9HAT5 Q9HBG2 Q9HBG3 Q9HBH4 Q9HBI3	NM_001243812.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000277549.5	CACNA1B-201	9796	1533aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PDR3 Q59FJ3 Q9HAT4 Q9HBG1 Q9HBG3 Q9HBH4	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000371363.1	CACNA1B-003	9758	2337aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B1AQK6 Q9HAT4 Q9HAT5 Q9HBG2 Q9HBG3 Q9HBH4 Q9HBI3	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000371355.4	CACNA1B-203	9648	2340aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F6RH32 Q9HAT4 Q9HAT5 Q9HBG2 Q9HBG3 Q9HBH4 Q9HBI4	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000371357.1	CACNA1B-005	9642	2338aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B1AQK7 Q9HAT4 Q9HAT5 Q9HBG2 Q9HBG3 Q9HBH4 Q9HBI4	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000277551.2	CACNA1B-002	7158	2237aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS59523	B1AQK4 Q9HAT4 Q9HAT5 Q9HBG2 Q9HBG3 Q9HBH4 Q9HBI3	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000545473.1	CACNA1B-206	770	187aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q9HAT3	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000371365.2	CACNA1B-204	683	164aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0Y7I8 Q5JRE4 Q9HBH3	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000413253.1	CACNA1B-004	492	164aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5JRE4 Q9HBH3	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000371367.5	CACNA1B-205	448	108aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q9HBH2	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000277550.3	CACNA1B-202	303	101aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q9HAT6	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,

Summary

Name

CACNA1B (HGNC Symbol)

UniProtKB

This gene has proteins that correspond to the following UniProtKB identifiers: Q00975

CCDS

This gene is a member of the Human CCDS set: CCDS59522.1, CCDS59523.1

Ensembl version

ENSG00000148408.8

Other assemblies

This gene maps to 137,877,789-138,124,624 in GRCh38 coordinates.

Gene type

Protein coding

Annotation method

Annotation for this gene includes both automatic annotation from Ensembl and Havana manual curation, see article.

Alternative genes

This gene corresponds to the following database identifiers:

Havana gene:	OTTHUMG00000021002 (version 2)

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Gene: CACNA1B ENSG00000148408

Summary