Description
protocadherin-related 15 [Source:HGNC Symbol;Acc:14674]
Gene Synonyms
CDHR15, DFNB23, USH1F
Location
Chromosome 10: 55,562,531-57,387,702 reverse strand.
GRCh37:CM000672.1
About this gene
This gene has 23 transcripts (splice variants), 9 paralogues and is associated with 7 phenotypes.
Transcripts
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|---|
| ENST00000361849.3 | PCDH15-011 | 6957 | 1957aa | ENSP00000354950.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS44404 | A2A3D9 A2A3E7 | NM_001142768.1 | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000373965.2 | PCDH15-008 | 9258 | 1684aa | ENSP00000363076.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A2A3D9 A9Z1W1 | NM_001142772.1 | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, | |
| ENST00000414778.1 | PCDH15-202 | 9249 | 1681aa | ENSP00000410304.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C9J4F3 | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, | |
| ENST00000395432.2 | PCDH15-201 | 6901 | 1915aa | ENSP00000378820.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS44402 | A2A3D9 E7EMG0 | NM_001142767.1 | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000395433.1 | PCDH15-013 | 6882 | 1932aa | ENSP00000378821.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS44401 | A2A3E8 | NM_001142773.1 | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000320301.6 | PCDH15-001 | 6845 | 1955aa | ENSP00000322604.6 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS7248 | A2A3D9 Q96QU1 | NM_033056.3 | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000395430.1 | PCDH15-012 | 6836 | 1952aa | ENSP00000378818.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS44403 | A2A3D9 A2A3E6 | NM_001142766.1 | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000437009.1 | PCDH15-203 | 6056 | 1886aa | ENSP00000412628.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A2A3D9 E7EM53 | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, | |
| ENST00000395438.1 | PCDH15-017 | 6044 | 1539aa | ENSP00000378826.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS44400 | A2A3D9 A2A3E3 | NM_001142770.1 | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000395445.1 | PCDH15-007 | 5862 | 1785aa | ENSP00000378832.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A2A3D9 A2A3E2 | NM_001142769.1 | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, | |
| ENST00000409834.1 | PCDH15-018 | 5058 | 1150aa | ENSP00000386693.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | B7ZBT8 | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, | |
| ENST00000373955.1 | PCDH15-002 | 4230 | 961aa | ENSP00000363066.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A2A3D9 Q96QU1 | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, | |
| ENST00000373957.3 | PCDH15-019 | 3471 | 809aa | ENSP00000363068.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A2A3D8 | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, | |
| ENST00000395446.1 | PCDH15-014 | 3450 | 981aa | ENSP00000378833.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A2A3D9 A2A3E4 | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, | |
| ENST00000395440.1 | PCDH15-016 | 2664 | 719aa | ENSP00000378827.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A2A3D9 A2A3E5 | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, | |
| ENST00000395442.1 | PCDH15-015 | 2457 | 650aa | ENSP00000378829.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A2A3D9 A2A3E1 | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, | |
| ENST00000458638.1 | PCDH15-004 | 448 | 92aa | ENSP00000394465.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A2A3D9 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000448885.1 | PCDH15-020 | 6771 | 654aa | ENSP00000412320.1 | Nonsense mediated decay | A2A3D9 E7EMG8 | - | - | |
| ENST00000373956.3 | PCDH15-021 | 5158 | 54aa | ENSP00000363067.3 | Nonsense mediated decay | F8WCD8 | - | - | |
| ENST00000414367.1 | PCDH15-006 | 2905 | 329aa | ENSP00000412531.1 | Nonsense mediated decay | A2A3D9 E7EM97 | - | - | |
| ENST00000463095.1 | PCDH15-003 | 3469 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000495484.1 | PCDH15-009 | 1896 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000476074.1 | PCDH15-010 | 754 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - |
