Gene: SLC6A6 ENSG00000131389

Description

solute carrier family 6 (neurotransmitter transporter), member 6 [Source:HGNC Symbol;Acc:11052]

Gene Synonyms

TAUT

Location

Chromosome 3: 14,444,076-14,530,857 forward strand.

GRCh37:CM000665.1

About this gene

This gene has 11 transcripts (splice variants) and 12 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000454876.2	SLC6A6-001	6534	620aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS33705	C9JPV1 P31641	NM_003043.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000360861.3	SLC6A6-201	6506	620aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS33705	C9JPV1 P31641	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000416216.2	SLC6A6-004	1260	200aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS46765	C9JPV1 P31641	NM_001134368.2	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000452775.1	SLC6A6-009	458	109aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JPV1	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000452151.1	SLC6A6-011	284	95aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000458124.1	SLC6A6-006	6409	359aa	Nonsense mediated decay		C9JPV1 E9PDM3 Q59GD7	-	-
ENST00000427436.1	SLC6A6-002	1991	359aa	Nonsense mediated decay		C9JPV1 E9PDM3 Q59GD7	-	-
ENST00000435095.1	SLC6A6-005	1124	112aa	Nonsense mediated decay		F8WF95	-	-
ENST00000484191.1	SLC6A6-007	697	No protein	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000490683.1	SLC6A6-008	573	No protein	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000428884.2	SLC6A6-003	996	No protein	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Name

SLC6A6 (HGNC Symbol)

UniProtKB

This gene has proteins that correspond to the following UniProtKB identifiers: P31641

CCDS

This gene is a member of the Human CCDS set: CCDS33705.1, CCDS46765.1

Ensembl version

ENSG00000131389.12

Other assemblies

There is no ungapped mapping of this gene onto the GRCh38 assembly.

Gene type

Protein coding

Annotation method

Annotation for this gene includes both automatic annotation from Ensembl and Havana manual curation, see article.

Alternative genes

This gene corresponds to the following database identifiers:

Havana gene:	OTTHUMG00000155525 (version 3)

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Gene: SLC6A6 ENSG00000131389

Summary