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Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: SDF4 ENSG00000078808

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Description

stromal cell derived factor 4 [Source:HGNC Symbol;Acc:24188]

Gene Synonyms

CAB45, Cab45, SDF-4

Location

Chromosome 1: 1,152,288-1,167,411 reverse strand.

GRCh37:CM000663.1

About this gene

This gene has 8 transcripts (splice variants) and 4 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000360001.6	SDF4-001	1956	362aa	ENSP00000353094.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS30553	Q9BRK5	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000263741.7	SDF4-007	2079	348aa	ENSP00000263741.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS12	Q9BRK5	NM_016547.2	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000545427.1	SDF4-201	861	202aa	ENSP00000444451.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q9BRK5	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000403997.2	SDF4-006	728	243aa	ENSP00000384207.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000465727.1	SDF4-002	2095	254aa	ENSP00000435962.1	Nonsense mediated decay		G3V1E2	-	-
ENST00000459994.2	SDF4-005	604	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000494748.1	SDF4-003	3516	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000478938.1	SDF4-004	2591	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

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Summary

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