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Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: RPRD1A ENSG00000141425

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Description

regulation of nuclear pre-mRNA domain containing 1A [Source:HGNC Symbol;Acc:25560]

Gene Synonyms

FLJ10656, HsT3101, P15RS

Location

Chromosome 18: 33,564,350-33,647,539 reverse strand.

GRCh37:CM000680.1

About this gene

This gene has 13 transcripts (splice variants) and 2 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000399022.4	RPRD1A-001	4438	312aa	ENSP00000381984.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11917	K7ER50 Q96P16	NM_018170.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000590898.1	RPRD1A-005	1945	276aa	ENSP00000467991.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7ER50 Q96P16	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000357384.4	RPRD1A-004	1850	312aa	ENSP00000349955.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11917	K7ER50 Q96P16	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000585953.1	RPRD1A-009	1648	123aa	ENSP00000467268.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000337059.5	RPRD1A-202	1590	276aa	ENSP00000337476.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7ER50 Q96P16	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000588737.1	RPRD1A-002	1264	276aa	ENSP00000465444.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7ER50 Q96P16	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000319040.6	RPRD1A-201	1022	289aa	ENSP00000314602.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q96P16	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000587563.1	RPRD1A-010	643	49aa	ENSP00000468108.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7ER50	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000585879.1	RPRD1A-011	425	4aa	ENSP00000468173.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000589050.1	RPRD1A-003	1022	289aa	ENSP00000468209.1	Non stop decay		Q96P16	-	-
ENST00000592674.1	RPRD1A-007	566	73aa	ENSP00000467949.1	Nonsense mediated decay		K7EQR8	-	-
ENST00000588459.1	RPRD1A-008	576	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000591994.1	RPRD1A-006	2484	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

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Summary

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