Description
sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D [Source:HGNC Symbol;Acc:10732]
Gene Synonyms
C9orf164, CD100, FLJ39737, M-sema-G, SEMAJ, coll-4
Location
Chromosome 9: 91,975,702-92,113,045 reverse strand.
GRCh37:CM000671.1
About this gene
This gene has 25 transcripts (splice variants), 11 paralogues and is associated with 1 phenotype.
Transcripts
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|---|
| ENST00000450295.1 | SEMA4D-018 | 5684 | 862aa | ENSP00000416523.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS6685 | C9JD54 C9JFP1 C9JYS7 F5H044 Q92854 | - | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000438547.2 | SEMA4D-004 | 4824 | 862aa | ENSP00000405102.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS6685 | C9JD54 C9JFP1 C9JYS7 F5H044 Q92854 | NM_006378.3 | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000356444.2 | SEMA4D-202 | 4503 | 862aa | ENSP00000348822.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS6685 | C9JD54 C9JFP1 C9JYS7 F5H044 Q92854 | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000422704.2 | SEMA4D-005 | 4382 | 862aa | ENSP00000388768.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS6685 | C9JD54 C9JFP1 C9JYS7 F5H044 Q92854 | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000420987.1 | SEMA4D-203 | 4275 | 738aa | ENSP00000391733.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS47991 | C9JD54 C9JFP1 C9JYS7 F5H044 Q92854 | NM_001142287.1 | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000339861.4 | SEMA4D-006 | 4258 | 738aa | ENSP00000344923.4 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS47991 | C9JD54 C9JFP1 C9JYS7 F5H044 Q92854 | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000455551.2 | SEMA4D-001 | 3594 | 738aa | ENSP00000411981.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS47991 | C9JD54 C9JFP1 C9JYS7 F5H044 Q92854 | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000343780.4 | SEMA4D-201 | 3146 | 738aa | ENSP00000343418.4 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS47991 | C9JD54 C9JFP1 C9JYS7 F5H044 Q92854 | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000420101.2 | SEMA4D-008 | 1837 | 123aa | ENSP00000399948.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q92854 | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, | |
| ENST00000420681.2 | SEMA4D-013 | 907 | 146aa | ENSP00000390754.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C9JD54 C9JFP1 C9JYS7 F5H044 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000540475.1 | SEMA4D-020 | 826 | 66aa | ENSP00000438389.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C9JD54 F5H044 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000433650.1 | SEMA4D-016 | 602 | 75aa | ENSP00000413352.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C9JD54 C9JYS7 F5H044 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000418828.1 | SEMA4D-014 | 563 | 59aa | ENSP00000416747.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C9JD54 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000420670.1 | SEMA4D-015 | 433 | 1aa | ENSP00000405652.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000429836.1 | SEMA4D-003 | 2895 | 548aa | ENSP00000395222.1 | Nonsense mediated decay | C9JD54 C9JFP1 C9JYS7 E9PFD9 F5H044 | - | - | |
| ENST00000537934.1 | SEMA4D-019 | 2710 | 548aa | ENSP00000446394.1 | Nonsense mediated decay | C9JD54 C9JFP1 C9JYS7 E9PFD9 F5H044 | - | - | |
| ENST00000469653.1 | SEMA4D-009 | 3533 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000475255.1 | SEMA4D-007 | 3053 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000482128.1 | SEMA4D-012 | 493 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000464051.1 | SEMA4D-002 | 317 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000492386.1 | SEMA4D-010 | 2396 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000486935.2 | SEMA4D-011 | 969 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000544513.1 | SEMA4D-021 | 599 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000474258.1 | SEMA4D-017 | 528 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000540183.1 | SEMA4D-022 | 176 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - |
