Description
UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 6 (GalNAc-T6) [Source:HGNC Symbol;Acc:4128]
Gene Synonyms
GALNAC-T6, GalNAcT6
Location
Chromosome 12: 51,745,031-51,786,651 reverse strand.
GRCh37:CM000674.1
About this gene
This gene has 19 transcripts (splice variants) and 16 paralogues.
Transcripts
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|---|
| ENST00000543196.2 | GALNT6-002 | 5207 | 622aa | ENSP00000444171.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS8813 | B3KRZ8 Q8NCL4 S4R310 S4R345 S4R355 S4R370 S4R396 S4R3A9 S4R3L4 S4R3M3 | - | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000356317.3 | GALNT6-001 | 2809 | 622aa | ENSP00000348668.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS8813 | B3KRZ8 Q8NCL4 S4R310 S4R345 S4R355 S4R370 S4R396 S4R3A9 S4R3L4 S4R3M3 | NM_007210.3 | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000603563.1 | GALNT6-015 | 697 | 55aa | ENSP00000473948.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | S4R355 S4R370 S4R3L4 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000605138.1 | GALNT6-016 | 626 | 39aa | ENSP00000473981.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | S4R370 S4R3L4 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000605617.1 | GALNT6-007 | 582 | 68aa | ENSP00000473836.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | S4R310 S4R355 S4R370 S4R396 S4R3L4 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000603188.1 | GALNT6-012 | 581 | 62aa | ENSP00000474052.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | S4R355 S4R370 S4R396 S4R3L4 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000604506.1 | GALNT6-017 | 574 | 23aa | ENSP00000474163.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | S4R3L4 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000604381.1 | GALNT6-008 | 567 | 137aa | ENSP00000474101.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | S4R310 S4R345 S4R355 S4R370 S4R396 S4R3A9 S4R3L4 S4R3M3 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000604847.1 | GALNT6-011 | 554 | 123aa | ENSP00000474515.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | S4R310 S4R345 S4R355 S4R370 S4R396 S4R3L4 S4R3M3 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000605055.1 | GALNT6-009 | 548 | 23aa | ENSP00000474483.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | S4R3L4 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000604426.1 | GALNT6-005 | 538 | 78aa | ENSP00000473918.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | S4R310 S4R345 S4R355 S4R370 S4R396 S4R3L4 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000603641.1 | GALNT6-003 | 1859 | 365aa | ENSP00000474670.1 | Nonsense mediated decay | S4R310 S4R345 S4R355 S4R370 S4R396 S4R3A9 S4R3L4 S4R3M3 S4R3S5 | - | - | |
| ENST00000603203.1 | GALNT6-018 | 557 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000605089.1 | GALNT6-020 | 555 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000605822.1 | GALNT6-006 | 549 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000605367.1 | GALNT6-013 | 494 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000605720.1 | GALNT6-010 | 476 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000603482.1 | GALNT6-021 | 372 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000603680.1 | GALNT6-004 | 2206 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - |
