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Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: GALNT6 ENSG00000139629

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Description

UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 6 (GalNAc-T6) [Source:HGNC Symbol;Acc:4128]

Gene Synonyms

GALNAC-T6, GalNAcT6

Location

Chromosome 12: 51,745,031-51,786,651 reverse strand.

GRCh37:CM000674.1

About this gene

This gene has 19 transcripts (splice variants), 157 orthologues and 19 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000543196.2	GALNT6-002	5207	622aa	ENSP00000444171.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8813	B3KRZ8 Q8NCL4 S4R310 S4R345 S4R355 S4R370 S4R396 S4R3A9 S4R3L4 S4R3M3	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000356317.3	GALNT6-001	2809	622aa	ENSP00000348668.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8813	B3KRZ8 Q8NCL4 S4R310 S4R345 S4R355 S4R370 S4R396 S4R3A9 S4R3L4 S4R3M3	NM_007210.3	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000603563.1	GALNT6-015	697	55aa	ENSP00000473948.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		S4R355 S4R370 S4R3L4	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000605138.1	GALNT6-016	626	39aa	ENSP00000473981.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		S4R370 S4R3L4	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000605617.1	GALNT6-007	582	68aa	ENSP00000473836.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		S4R310 S4R355 S4R370 S4R396 S4R3L4	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000603188.1	GALNT6-012	581	62aa	ENSP00000474052.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		S4R355 S4R370 S4R396 S4R3L4	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000604506.1	GALNT6-017	574	23aa	ENSP00000474163.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		S4R3L4	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000604381.1	GALNT6-008	567	137aa	ENSP00000474101.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		S4R310 S4R345 S4R355 S4R370 S4R396 S4R3A9 S4R3L4 S4R3M3	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000604847.1	GALNT6-011	554	123aa	ENSP00000474515.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		S4R310 S4R345 S4R355 S4R370 S4R396 S4R3L4 S4R3M3	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000605055.1	GALNT6-009	548	23aa	ENSP00000474483.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		S4R3L4	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000604426.1	GALNT6-005	538	78aa	ENSP00000473918.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		S4R310 S4R345 S4R355 S4R370 S4R396 S4R3L4	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000603641.1	GALNT6-003	1859	365aa	ENSP00000474670.1	Nonsense mediated decay		S4R310 S4R345 S4R355 S4R370 S4R396 S4R3A9 S4R3L4 S4R3M3 S4R3S5	-	-
ENST00000603203.1	GALNT6-018	557	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000605089.1	GALNT6-020	555	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000605822.1	GALNT6-006	549	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000605367.1	GALNT6-013	494	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000605720.1	GALNT6-010	476	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000603482.1	GALNT6-021	372	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000603680.1	GALNT6-004	2206	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

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Summary

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