Description
tropomyosin 4 [Source:HGNC Symbol;Acc:12013]
Gene Synonyms
HEL-S-108
Location
Chromosome 19: 16,177,831-16,213,813 forward strand.
GRCh37:CM000681.1
About this gene
This gene has 17 transcripts (splice variants), 3 paralogues and is associated with 42 phenotypes.
Transcripts
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|---|
| ENST00000538887.1 | TPM4-201 | 1542 | 284aa | ENSP00000439135.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS46007 | K7ELP0 K7EMU5 K7EPV9 P67936 | - | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000300933.4 | TPM4-002 | 2542 | 248aa | ENSP00000300933.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS12338 | B4DVY2 K7EMU5 K7EPV9 P67936 | NM_003290.2 | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000344824.6 | TPM4-001 | 1417 | 284aa | ENSP00000345230.5 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS46007 | K7ELP0 K7EMU5 K7EPV9 P67936 | NM_001145160.1 | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000588483.1 | TPM4-014 | 801 | 16aa | ENSP00000466106.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000586499.1 | TPM4-008 | 708 | 170aa | ENSP00000468246.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | K7ERG3 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000592138.1 | TPM4-015 | 635 | 102aa | ENSP00000466654.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | K7EMU5 K7EPV9 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000589897.1 | TPM4-007 | 586 | 69aa | ENSP00000466158.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | K7ELP0 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000588410.1 | TPM4-012 | 563 | 138aa | ENSP00000467250.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | K7EP68 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000586833.1 | TPM4-009 | 558 | 179aa | ENSP00000467087.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | K7ENT6 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000588507.1 | TPM4-010 | 367 | 96aa | ENSP00000467558.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | K7EPV9 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000592822.1 | TPM4-019 | 262 | 59aa | ENSP00000468010.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | K7EQW8 | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, | |
| ENST00000588032.1 | TPM4-016 | 712 | 110aa | ENSP00000467319.1 | Nonsense mediated decay | - | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, | |
| ENST00000591645.1 | TPM4-018 | 653 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000590180.1 | TPM4-013 | 521 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000591226.1 | TPM4-006 | 2672 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000587201.1 | TPM4-011 | 877 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000586193.1 | TPM4-017 | 545 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - |
