Description
structural maintenance of chromosomes 4 [Source:HGNC Symbol;Acc:14013]
Gene Synonyms
CAP-C, CAPC, SMC-4, SMC4L1, hCAP-C
Location
Chromosome 3: 160,117,062-160,152,750 forward strand.
GRCh37:CM000665.1
About this gene
This gene has 28 transcripts (splice variants).
Transcripts
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|---|
| ENST00000357388.3 | SMC4-001 | 5471 | 1288aa | ENSP00000349961.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS3189 | C9IYK2 C9J578 C9J9E4 C9JJ64 C9JR83 C9JVD8 C9JWF0 Q9NTJ3 | NM_001002800.1 | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000344722.5 | SMC4-007 | 5356 | 1288aa | ENSP00000341382.5 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS3189 | C9IYK2 C9J578 C9J9E4 C9JJ64 C9JR83 C9JVD8 C9JWF0 Q9NTJ3 | NM_005496.3 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000462787.1 | SMC4-006 | 5033 | 1230aa | ENSP00000420734.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C9IYK2 C9J578 C9J9E4 C9JJ64 C9JR83 C9JVD8 C9JWF0 Q9NTJ3 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000360111.2 | SMC4-201 | 4948 | 1230aa | ENSP00000353225.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C9IYK2 C9J578 C9J9E4 C9JJ64 C9JR83 C9JVD8 C9JWF0 Q9NTJ3 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000469762.1 | SMC4-003 | 3998 | 1263aa | ENSP00000417964.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C9J578 C9J9E4 C9JVD8 E9PD53 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000489573.1 | SMC4-005 | 1553 | 423aa | ENSP00000420121.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C9IYK2 C9J578 C9J9E4 C9JJ64 C9JR83 C9JVD8 C9JWF0 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000465903.1 | SMC4-010 | 849 | 170aa | ENSP00000419247.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C9JWF0 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000490207.1 | SMC4-015 | 821 | 180aa | ENSP00000420817.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C9IYK2 C9JJ64 C9JWF0 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000497311.1 | SMC4-009 | 708 | 173aa | ENSP00000418820.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C9IYK2 C9JWF0 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000485867.1 | SMC4-016 | 629 | 157aa | ENSP00000417612.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C9J9E4 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000485645.1 | SMC4-011 | 583 | 173aa | ENSP00000420644.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C9IYK2 C9JWF0 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000472991.1 | SMC4-012 | 582 | 139aa | ENSP00000417999.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C9J578 C9JVD8 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000467468.1 | SMC4-014 | 566 | 119aa | ENSP00000419360.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C9JVD8 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000469858.1 | SMC4-004 | 1971 | 50aa | ENSP00000418434.1 | Nonsense mediated decay | F8WCB7 | - | - | |
| ENST00000470240.1 | SMC4-017 | 724 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000472282.1 | SMC4-013 | 667 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000487747.1 | SMC4-026 | 637 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000494612.1 | SMC4-020 | 622 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000497984.1 | SMC4-018 | 563 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000462668.1 | SMC4-008 | 4235 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000468653.1 | SMC4-002 | 1756 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000465563.1 | SMC4-019 | 747 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000486711.1 | SMC4-025 | 621 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000488017.1 | SMC4-024 | 592 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000497203.1 | SMC4-023 | 490 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000484799.1 | SMC4-027 | 478 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000493695.1 | SMC4-022 | 457 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000467263.1 | SMC4-021 | 401 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - |
