Gene: SSX2 ENSG00000241476

Description

synovial sarcoma, X breakpoint 2 [Source:HGNC Symbol;Acc:11336]

Gene Synonyms

CT5.2, CT5.2A, CT5.2a, CT5.2b, HD21, HOM-MEL-40, MGC119055, MGC15364, MGC3884, SSX, SSX2A

Location

GRCh37:CM000685.1

View alleles of this gene on alternative sequences

About this gene

This gene has 3 transcripts (splice variants), 1 gene allele, 7 paralogues and is associated with 18 phenotypes.

Transcripts

Transcript ID	Name	bp	Protein	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000336777.5	SSX2-001	1410	223aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS14345	Q16385 Q9NZK4	NM_003147.5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000337502.5	SSX2-002	1292	188aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS14344	Q16385	NM_175698.2	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000476392.1	SSX2-003	677	No protein	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Name

SSX2 (HGNC Symbol)

UniProtKB

This gene has proteins that correspond to the following UniProtKB identifiers: Q16385

CCDS

This gene is a member of the Human CCDS set: CCDS14344.1, CCDS14345.1

Ensembl version

ENSG00000241476.3

Other assemblies

This gene maps to 52,696,896-52,707,189 in GRCh38 coordinates.

Gene type

Protein coding

Annotation method

Annotation for this gene includes both automatic annotation from Ensembl and Havana manual curation, see article.

Alternative genes

This gene corresponds to the following database identifiers:

Havana gene:	OTTHUMG00000022697 (version 1)

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