Description
tyrosyl-DNA phosphodiesterase 1 [Source:HGNC Symbol;Acc:18884]
Gene Synonyms
FLJ11090, SCAN1
Location
Chromosome 14: 90,421,283-90,511,106 forward strand.
GRCh37:CM000676.1
About this gene
This gene has 18 transcripts (splice variants) and is associated with 2 phenotypes.
Transcripts
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|---|
| ENST00000335725.4 | TDP1-001 | 3696 | 608aa | ENSP00000337353.4 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS9888 | B3KN41 G3V2J6 G3V2U6 G3V3Q0 G3V554 G3V5B8 G3V5F9 Q9NUW8 | NM_018319.3 | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000393452.3 | TDP1-003 | 2370 | 589aa | ENSP00000377098.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | E7EPD8 G3V2J6 G3V2U6 G3V3Q0 G3V554 G3V5B8 G3V5F9 | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, | |
| ENST00000357382.3 | TDP1-201 | 2210 | 369aa | ENSP00000349952.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | B3KN41 Q86TV8 | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, | |
| ENST00000393454.2 | TDP1-006 | 2068 | 608aa | ENSP00000377099.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS9888 | B3KN41 G3V2J6 G3V2U6 G3V3Q0 G3V554 G3V5B8 G3V5F9 Q9NUW8 | NM_001008744.1 | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000555880.1 | TDP1-007 | 1894 | 578aa | ENSP00000450628.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | G3V2F4 G3V2J6 G3V2U6 G3V3Q0 G3V554 G3V5B8 G3V5F9 | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, | |
| ENST00000556063.1 | TDP1-008 | 1076 | 281aa | ENSP00000450795.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, | |
| ENST00000554180.1 | TDP1-009 | 910 | 279aa | ENSP00000450872.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | G3V2U6 G3V3Q0 G3V554 G3V5B8 G3V5F9 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000553527.1 | TDP1-013 | 910 | 146aa | ENSP00000451358.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | G3V3Q0 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000553617.1 | TDP1-010 | 876 | 219aa | ENSP00000450708.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | G3V2J6 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000556867.1 | TDP1-011 | 748 | 151aa | ENSP00000452279.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | G3V3Q0 G3V5B8 G3V5F9 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000553989.1 | TDP1-014 | 728 | 147aa | ENSP00000452333.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | G3V3Q0 G3V5F9 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000556498.1 | TDP1-017 | 597 | 161aa | ENSP00000452183.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | G3V3Q0 G3V554 G3V5B8 G3V5F9 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000554976.1 | TDP1-002 | 3040 | 191aa | ENSP00000452042.1 | Nonsense mediated decay | G3V3Q0 G3V4W8 G3V554 G3V5B8 G3V5F9 | - | - | |
| ENST00000545686.2 | TDP1-004 | 2488 | 298aa | ENSP00000444587.2 | Nonsense mediated decay | G3V2U6 G3V3Q0 G3V554 G3V5B8 G3V5F9 Q9BRS7 | - | - | |
| ENST00000555178.1 | TDP1-005 | 2200 | 259aa | ENSP00000452363.1 | Nonsense mediated decay | G3V3Q0 G3V554 G3V5B8 G3V5F9 G3V5H9 | - | - | |
| ENST00000557782.1 | TDP1-016 | 318 | 51aa | ENSP00000451767.1 | Nonsense mediated decay | H0YJL7 | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, | |
| ENST00000555565.1 | TDP1-015 | 524 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000553569.1 | TDP1-012 | 879 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - |
