Description
CCR4-NOT transcription complex, subunit 1 [Source:HGNC Symbol;Acc:7877]
Gene Synonyms
AD-005, CDC39, KIAA1007, NOT1, NOT1H
Location
Chromosome 16: 58,553,855-58,663,790 reverse strand.
GRCh37:CM000678.1
About this gene
This gene has 23 transcripts (splice variants) and is associated with 5 phenotypes.
Transcripts
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|---|
| ENST00000317147.5 | CNOT1-001 | 8471 | 2376aa | ENSP00000320949.5 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS10799 | A5YKK6 B3KS60 B7Z6X2 H3BPF1 H3BT18 H3BUY8 | NM_016284.4 | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000569240.1 | CNOT1-003 | 7660 | 2371aa | ENSP00000455635.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS58468 | A5YKK6 B3KS60 B7Z6X2 H3BPF1 H3BT18 H3BUY8 | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000441024.2 | CNOT1-002 | 4999 | 1551aa | ENSP00000413113.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS45501 | A5YKK6 H3BPF1 H3BT18 H3BUY8 | NM_206999.2 | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000245138.4 | CNOT1-201 | 4098 | 1227aa | ENSP00000245138.4 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | B3KS60 B5MDN3 B7Z6X2 | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, | |
| ENST00000568917.1 | CNOT1-019 | 1317 | 439aa | ENSP00000454611.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | H3BMZ2 | - | 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete, | |
| ENST00000569882.1 | CNOT1-023 | 831 | 277aa | ENSP00000454377.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | H3BMH0 | - | 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete, | |
| ENST00000567285.1 | CNOT1-016 | 722 | 241aa | ENSP00000458057.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | - | 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete, | |
| ENST00000564557.1 | CNOT1-010 | 582 | 62aa | ENSP00000456975.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | H3BPF1 H3BT18 H3BUY8 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000562046.1 | CNOT1-022 | 578 | 193aa | ENSP00000456131.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | - | 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete, | |
| ENST00000567133.1 | CNOT1-017 | 553 | 185aa | ENSP00000454763.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | - | 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete, | |
| ENST00000569020.1 | CNOT1-008 | 535 | 25aa | ENSP00000457869.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | H3BUY8 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000565697.1 | CNOT1-007 | 385 | 25aa | ENSP00000455289.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | H3BPF1 H3BUY8 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000567188.1 | CNOT1-005 | 7830 | 2150aa | ENSP00000456649.1 | Nonsense mediated decay | A5YKK6 H3BPF1 H3BT18 H3BUY8 | - | - | |
| ENST00000565605.1 | CNOT1-020 | 739 | 96aa | ENSP00000457460.1 | Nonsense mediated decay | H3BPF1 H3BT18 H3BU44 H3BUY8 | - | - | |
| ENST00000566240.1 | CNOT1-018 | 567 | 68aa | ENSP00000457173.1 | Nonsense mediated decay | - | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, | |
| ENST00000569732.1 | CNOT1-015 | 906 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000568158.1 | CNOT1-009 | 496 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000569263.1 | CNOT1-006 | 304 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000563130.1 | CNOT1-004 | 2280 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000569916.1 | CNOT1-011 | 599 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000563283.1 | CNOT1-012 | 551 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000569924.1 | CNOT1-014 | 493 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000570139.1 | CNOT1-013 | 458 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - |
