Description
sphingosine kinase 1 [Source:HGNC Symbol;Acc:11240]
Gene Synonyms
SPHK, SPK
Location
Chromosome 17: 74,372,665-74,383,941 forward strand.
GRCh37:CM000679.1
About this gene
This gene has 10 transcripts (splice variants) and 4 paralogues.
Transcripts
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|---|
| ENST00000323374.4 | SPHK1-001 | 2138 | 470aa | ENSP00000313681.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS11744 | K7EJ32 K7EMA4 Q53ZR5 Q9BTG7 Q9NYA1 | NM_182965.2 | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000545180.1 | SPHK1-006 | 2238 | 384aa | ENSP00000440970.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS45785 | K7EJ32 K7EMA4 Q53ZR5 Q9BTG7 Q9NYA1 | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000590959.1 | SPHK1-003 | 1851 | 398aa | ENSP00000468547.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS59297 | Q9BTG7 Q9NYA1 | NM_021972.3 | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000592299.1 | SPHK1-002 | 1821 | 384aa | ENSP00000465726.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS45785 | K7EJ32 K7EMA4 Q53ZR5 Q9BTG7 Q9NYA1 | NM_001142601.1 | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000392496.3 | SPHK1-004 | 1779 | 384aa | ENSP00000376285.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS45785 | K7EJ32 K7EMA4 Q53ZR5 Q9BTG7 Q9NYA1 | NM_001142602.1 | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000588682.1 | SPHK1-009 | 858 | 152aa | ENSP00000466422.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | K7EJ32 K7EMA4 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000590379.1 | SPHK1-010 | 588 | 111aa | ENSP00000465002.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | K7EJ32 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000591651.1 | SPHK1-008 | 541 | 5aa | ENSP00000468474.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000591762.1 | SPHK1-005 | 2502 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000587167.1 | SPHK1-011 | 456 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - |
