Gene: PABPC1 ENSG00000070756

Description

poly(A) binding protein, cytoplasmic 1 [Source:HGNC Symbol;Acc:8554]

Gene Synonyms

PAB1, PABP, PABP1, PABPC2, PABPL1

Location

Chromosome 8: 101,698,044-101,735,037 reverse strand.

GRCh37:CM000670.1

About this gene

This gene has 23 transcripts (splice variants), 12 paralogues and is associated with 56 phenotypes.

Transcripts

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Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000318607.5	PABPC1-001	3485	636aa	ENSP00000313007.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS6289	E5RFD8 E5RGC4 E5RGH3 E5RH24 E5RHG7 E5RJB9 E5RJM8 E7EQV3 H0YB75 P11940	NM_002568.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000519004.1	PABPC1-002	2401	591aa	ENSP00000429594.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E5RGH3 E7EQV3 H0YB75	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000522387.1	PABPC1-003	2331	604aa	ENSP00000429395.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E5RFD8 E5RGC4 E5RHG7 E5RJM8 E7ERJ7 H0YB75	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000520868.1	PABPC1-006	971	169aa	ENSP00000428021.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000519100.1	PABPC1-012	851	284aa	ENSP00000427914.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000520142.1	PABPC1-008	754	118aa	ENSP00000430012.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E5RFD8 E5RGC4 E5RH24 E5RHG7 E5RJM8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000522658.1	PABPC1-005	736	183aa	ENSP00000428840.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YB75	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000518196.1	PABPC1-020	631	108aa	ENSP00000430159.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E5RGH3	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000521865.1	PABPC1-015	628	129aa	ENSP00000429119.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E5RFD8 E5RGC4 E5RH24 E5RHG7 E5RJB9 E5RJM8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000518293.1	PABPC1-021	608	42aa	ENSP00000430716.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000522720.1	PABPC1-017	593	75aa	ENSP00000429790.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E5RFD8 E5RGC4 E5RHG7 E5RJM8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000517403.1	PABPC1-007	560	187aa	ENSP00000428190.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000523555.1	PABPC1-009	522	174aa	ENSP00000429892.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000520804.1	PABPC1-018	493	43aa	ENSP00000428749.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E5RGC4 E5RJM8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000521067.1	PABPC1-016	492	61aa	ENSP00000428937.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E5RFD8 E5RGC4 E5RJM8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000517990.1	PABPC1-025	487	136aa	ENSP00000428030.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YAS7	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000519363.1	PABPC1-019	453	38aa	ENSP00000429032.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E5RJM8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000523636.1	PABPC1-014	818	165aa	ENSP00000428948.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000519622.1	PABPC1-024	667	131aa	ENSP00000427805.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000519596.1	PABPC1-013	771	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000517921.1	PABPC1-010	885	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000518716.1	PABPC1-022	694	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000519848.1	PABPC1-023	676	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

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Gene: PABPC1 ENSG00000070756

Summary