Description
poly(A) binding protein, cytoplasmic 1 [Source:HGNC Symbol;Acc:8554]
Gene Synonyms
PAB1, PABP, PABP1, PABPC2, PABPL1
Location
Chromosome 8: 101,698,044-101,735,037 reverse strand.
GRCh37:CM000670.1
About this gene
This gene has 23 transcripts (splice variants), 113 orthologues, 24 paralogues and is associated with 56 phenotypes.
Transcripts
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|---|
| ENST00000318607.5 | PABPC1-001 | 3485 | 636aa | ENSP00000313007.5 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS6289 | E5RFD8 E5RGC4 E5RGH3 E5RH24 E5RHG7 E5RJB9 E5RJM8 E7EQV3 H0YB75 P11940 | NM_002568.3 | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000519004.1 | PABPC1-002 | 2401 | 591aa | ENSP00000429594.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | E5RGH3 E7EQV3 H0YB75 | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, | |
| ENST00000522387.1 | PABPC1-003 | 2331 | 604aa | ENSP00000429395.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | E5RFD8 E5RGC4 E5RHG7 E5RJM8 E7ERJ7 H0YB75 | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, | |
| ENST00000520868.1 | PABPC1-006 | 971 | 169aa | ENSP00000428021.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, | |
| ENST00000519100.1 | PABPC1-012 | 851 | 284aa | ENSP00000427914.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | - | 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete, | |
| ENST00000520142.1 | PABPC1-008 | 754 | 118aa | ENSP00000430012.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | E5RFD8 E5RGC4 E5RH24 E5RHG7 E5RJM8 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000522658.1 | PABPC1-005 | 736 | 183aa | ENSP00000428840.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | H0YB75 | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, | |
| ENST00000518196.1 | PABPC1-020 | 631 | 108aa | ENSP00000430159.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | E5RGH3 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000521865.1 | PABPC1-015 | 628 | 129aa | ENSP00000429119.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | E5RFD8 E5RGC4 E5RH24 E5RHG7 E5RJB9 E5RJM8 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000518293.1 | PABPC1-021 | 608 | 42aa | ENSP00000430716.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, | |
| ENST00000522720.1 | PABPC1-017 | 593 | 75aa | ENSP00000429790.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | E5RFD8 E5RGC4 E5RHG7 E5RJM8 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000517403.1 | PABPC1-007 | 560 | 187aa | ENSP00000428190.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | - | 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete, | |
| ENST00000523555.1 | PABPC1-009 | 522 | 174aa | ENSP00000429892.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | - | 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete, | |
| ENST00000520804.1 | PABPC1-018 | 493 | 43aa | ENSP00000428749.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | E5RGC4 E5RJM8 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000521067.1 | PABPC1-016 | 492 | 61aa | ENSP00000428937.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | E5RFD8 E5RGC4 E5RJM8 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000517990.1 | PABPC1-025 | 487 | 136aa | ENSP00000428030.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | H0YAS7 | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, | |
| ENST00000519363.1 | PABPC1-019 | 453 | 38aa | ENSP00000429032.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | E5RJM8 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000523636.1 | PABPC1-014 | 818 | 165aa | ENSP00000428948.1 | Nonsense mediated decay | - | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, | |
| ENST00000519622.1 | PABPC1-024 | 667 | 131aa | ENSP00000427805.1 | Nonsense mediated decay | - | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, | |
| ENST00000519596.1 | PABPC1-013 | 771 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000517921.1 | PABPC1-010 | 885 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000518716.1 | PABPC1-022 | 694 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000519848.1 | PABPC1-023 | 676 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - |
