Gene: HMGA1 ENSG00000137309

Description

high mobility group AT-hook 1 [Source:HGNC Symbol;Acc:5010]

Gene Synonyms

HMG-R, HMGA1A, HMGIY

Location

Chromosome 6: 34,204,650-34,214,008 forward strand.

GRCh37:CM000668.1

About this gene

This gene has 7 transcripts (splice variants) and is associated with 28 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000447654.1	HMGA1-203	2159	107aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4789	P17096	NM_145902.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000311487.5	HMGA1-004	1920	107aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4789	P17096	NM_145899.2	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000401473.3	HMGA1-002	1887	96aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4788	P17096 Q5T6U8	NM_002131.3	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000374116.3	HMGA1-201	1848	96aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4788	P17096 Q5T6U8	NM_145905.2	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000347617.6	HMGA1-001	1773	96aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4788	P17096 Q5T6U8	NM_145903.2	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000395004.3	HMGA1-202	1726	328aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H7BYM6	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000478214.1	HMGA1-003	716	No protein	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Name

HMGA1 (HGNC Symbol)

UniProtKB

This gene has proteins that correspond to the following UniProtKB identifiers: P17096

CCDS

This gene is a member of the Human CCDS set: CCDS4788.1, CCDS4789.1

Ensembl version

ENSG00000137309.15

Other assemblies

This gene maps to 34,236,873-34,246,231 in GRCh38 coordinates.

Gene type

Protein coding

Annotation method

Annotation for this gene includes both automatic annotation from Ensembl and Havana manual curation, see article.

Alternative genes

This gene corresponds to the following database identifiers:

Havana gene:	OTTHUMG00000014539 (version 3)

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Gene: HMGA1 ENSG00000137309

Summary