Description
integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) [Source:HGNC Symbol;Acc:6153]
Gene Synonyms
CD29, FNRB, GPIIA, MDF2, MSK12, VLA-BETA, VLAB
Location
Chromosome 10: 33,189,247-33,294,720 reverse strand.
GRCh37:CM000672.1
About this gene
This gene has 20 transcripts (splice variants) and 9 paralogues.
Transcripts
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|---|
| ENST00000396033.2 | ITGB1-202 | 3784 | 798aa | ENSP00000379350.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS7174 | C9JJP8 C9JPK5 E7EQW5 E7ERX5 E9PLR6 E9PQJ2 P05556 Q5T3E4 Q5T3E5 Q5T3E6 | NM_133376.2 | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000374956.4 | ITGB1-201 | 3758 | 825aa | ENSP00000364094.4 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C9JJP8 C9JPK5 E7EQW5 E7ERX5 E9PLR6 E9PQJ2 P05556 Q5T3E4 Q5T3E5 Q5T3E6 | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, | |
| ENST00000423113.1 | ITGB1-203 | 3729 | 801aa | ENSP00000388694.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C9JJP8 C9JPK5 E7EQW5 E7ERX5 E9PLR6 E9PQJ2 P05556 Q5T3E4 Q5T3E5 Q5T3E6 | NM_033668.2 | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, | |
| ENST00000302278.3 | ITGB1-001 | 3640 | 798aa | ENSP00000303351.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS7174 | C9JJP8 C9JPK5 E7EQW5 E7ERX5 E9PLR6 E9PQJ2 P05556 Q5T3E4 Q5T3E5 Q5T3E6 | NM_002211.3 | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000488427.1 | ITGB1-005 | 861 | 70aa | ENSP00000417508.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, | |
| ENST00000474568.1 | ITGB1-004 | 788 | 98aa | ENSP00000420282.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C9JJP8 C9JPK5 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000472147.1 | ITGB1-013 | 668 | 14aa | ENSP00000420416.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000480226.1 | ITGB1-009 | 585 | 163aa | ENSP00000417537.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C9JJP8 C9JPK5 E7EQW5 E7ERX5 E9PLR6 E9PQJ2 Q5T3E4 Q5T3E5 Q5T3E6 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000417122.2 | ITGB1-003 | 569 | 89aa | ENSP00000404546.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C9JJP8 Q5T3E4 Q5T3E5 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000534049.1 | ITGB1-016 | 562 | 143aa | ENSP00000431326.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C9JJP8 E7ERX5 E9PLR6 E9PQJ2 Q5T3E4 Q5T3E5 Q5T3E6 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000475184.1 | ITGB1-012 | 552 | 124aa | ENSP00000417243.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C9JJP8 E7ERX5 E9PQJ2 Q5T3E4 Q5T3E5 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000528877.1 | ITGB1-015 | 546 | 104aa | ENSP00000436214.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C9JJP8 E9PQJ2 Q5T3E4 Q5T3E5 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000488494.1 | ITGB1-010 | 540 | 152aa | ENSP00000418725.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C9JJP8 E7EUI6 Q5T3E4 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000414670.1 | ITGB1-002 | 500 | 49aa | ENSP00000400544.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q5T3E4 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000437302.1 | ITGB1-006 | 445 | 136aa | ENSP00000398029.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C9JJP8 E7ERX5 E9PQJ2 Q5T3E4 Q5T3E5 Q5T3E6 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000493758.1 | ITGB1-007 | 366 | 31aa | ENSP00000420792.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C9JJP8 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000494395.1 | ITGB1-014 | 562 | 108aa | ENSP00000417799.1 | Nonsense mediated decay | - | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, | |
| ENST00000484088.1 | ITGB1-011 | 580 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000439974.3 | ITGB1-017 | 580 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000464001.1 | ITGB1-008 | 316 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - |
