Gene: SLC23A1 ENSG00000170482

Description

solute carrier family 23 (ascorbic acid transporter), member 1 [Source:HGNC Symbol;Acc:10974]

Gene Synonyms

SLC23A2, SVCT1, YSPL3

Location

Chromosome 5: 138,702,885-138,720,242 reverse strand.

GRCh37:CM000667.1

About this gene

This gene has 7 transcripts (splice variants) and 2 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000353963.3	SLC23A1-002	2303	602aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4213	Q9UHI7	NM_152685.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000348729.3	SLC23A1-001	2299	598aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4212	Q9UHI7	NM_005847.4	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000508270.1	SLC23A1-005	509	169aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YAJ1	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000504513.1	SLC23A1-009	406	136aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000503919.1	SLC23A1-007	559	No protein	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000502863.1	SLC23A1-006	583	No protein	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000506512.1	SLC23A1-008	560	No protein	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Name

SLC23A1 (HGNC Symbol)

UniProtKB

This gene has proteins that correspond to the following UniProtKB identifiers: Q9UHI7

CCDS

This gene is a member of the Human CCDS set: CCDS4212.1, CCDS4213.1

Ensembl version

ENSG00000170482.12

Other assemblies

This gene maps to 139,367,196-139,384,553 in GRCh38 coordinates.

Gene type

Protein coding

Annotation method

Annotation for this gene includes both automatic annotation from Ensembl and Havana manual curation, see article.

Alternative genes

This gene corresponds to the following database identifiers:

Havana gene:	OTTHUMG00000129228 (version 3)

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Gene: SLC23A1 ENSG00000170482

Summary