Gene: CHRFAM7A ENSG00000166664

Description

CHRNA7 (cholinergic receptor, nicotinic, alpha 7, exons 5-10) and FAM7A (family with sequence similarity 7A, exons A-E) fusion [Source:HGNC Symbol;Acc:15781]

Gene Synonyms

CHRNA7, CHRNA7-DR1, D-10

Location

Chromosome 15: 30,653,443-30,686,052 reverse strand.

GRCh37:CM000677.1

About this gene

This gene has 7 transcripts (splice variants) and 9 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000299847.2	CHRFAM7A-002	2393	412aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS32184	H3BPP0 Q494W8 Q693P7	NM_139320.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000397827.3	CHRFAM7A-201	2794	321aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS42008	Q693P7	NM_148911.1	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000401522.3	CHRFAM7A-001	1913	321aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS42008	Q693P7	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000562729.1	CHRFAM7A-004	573	104aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BPP0	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000567722.1	CHRFAM7A-003	689	No protein	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000570098.2	CHRFAM7A-006	316	No protein	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000569278.1	CHRFAM7A-005	464	No protein	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Name

CHRFAM7A (HGNC Symbol)

UniProtKB

This gene has proteins that correspond to the following UniProtKB identifiers: Q494W8

CCDS

This gene is a member of the Human CCDS set: CCDS32184.1, CCDS42008.1

Ensembl version

ENSG00000166664.9

Other assemblies

This gene maps to 30,361,240-30,393,849 in GRCh38 coordinates.

Gene type

Protein coding

Annotation method

Annotation for this gene includes both automatic annotation from Ensembl and Havana manual curation, see article.

Alternative genes

This gene corresponds to the following database identifiers:

Havana gene:	OTTHUMG00000175645 (version 2)

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Gene: CHRFAM7A ENSG00000166664

Summary