Description
protein tyrosine phosphatase, receptor type, N [Source:HGNC Symbol;Acc:9676]
Gene Synonyms
IA-2, IA-2/PTP, IA2, ICA3, ICA512, R-PTP-N
Location
Chromosome 2: 220,154,345-220,174,370 reverse strand.
GRCh37:CM000664.1
About this gene
This gene has 19 transcripts (splice variants) and 13 paralogues.
Transcripts
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|---|
| ENST00000295718.2 | PTPRN-001 | 3784 | 979aa | ENSP00000295718.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS2440 | C9J392 C9JCQ0 C9JJL7 Q16849 Q7KZS4 Q96IA0 | NM_002846.3 | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000409251.3 | PTPRN-003 | 3622 | 950aa | ENSP00000386638.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS56168 | C9J392 C9JCQ0 C9JJL7 Q16849 | NM_001199763.1 | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000423636.2 | PTPRN-021 | 3313 | 889aa | ENSP00000392598.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS56167 | C9J392 C9JCQ0 C9JJL7 Q16849 Q7KZS4 Q96IA0 | NM_001199764.1 | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000443981.1 | PTPRN-020 | 1051 | 137aa | ENSP00000396842.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, | |
| ENST00000446182.1 | PTPRN-008 | 606 | 124aa | ENSP00000395379.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C9J392 C9JCQ0 C9JJL7 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000440552.1 | PTPRN-011 | 579 | 166aa | ENSP00000408036.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C9J392 C9JCQ0 C9JR27 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000412847.1 | PTPRN-012 | 563 | 125aa | ENSP00000388429.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C9J392 C9JCQ0 C9JJL7 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000442029.1 | PTPRN-013 | 541 | 86aa | ENSP00000396464.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C9J392 C9JCQ0 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000451506.1 | PTPRN-009 | 466 | 67aa | ENSP00000397105.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C9J392 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000606213.1 | PTPRN-005 | 592 | 52aa | ENSP00000475591.1 | Nonsense mediated decay | U3KQ66 | - | - | |
| ENST00000497977.1 | PTPRN-019 | 701 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000468454.1 | PTPRN-014 | 504 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000462351.1 | PTPRN-006 | 5099 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000460801.1 | PTPRN-007 | 2239 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000476930.1 | PTPRN-016 | 582 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000477819.1 | PTPRN-015 | 579 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000489650.1 | PTPRN-018 | 571 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000486480.1 | PTPRN-017 | 563 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000484986.1 | PTPRN-010 | 545 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - |
