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Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: CAPN13 ENSG00000162949

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Description

calpain 13 [Source:HGNC Symbol;Acc:16663]

Gene Synonyms

FLJ23523

Location

Chromosome 2: 30,945,637-31,043,408 reverse strand.

GRCh37:CM000664.1

About this gene

This gene has 8 transcripts (splice variants) and 13 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000295055.8	CAPN13-001	2683	669aa	ENSP00000295055.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS46252	Q6MZZ7	NM_144575.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000534090.2	CAPN13-201	2677	669aa	ENSP00000431298.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8W7Z8	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000450650.1	CAPN13-003	2328	125aa	ENSP00000403180.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000458085.2	CAPN13-004	2269	423aa	ENSP00000416191.2	Nonsense mediated decay		Q6MZZ7	-	-
ENST00000485248.2	CAPN13-006	710	102aa	ENSP00000440723.1	Nonsense mediated decay		F5GYA7	-	-
ENST00000465960.2	CAPN13-005	1215	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000490786.1	CAPN13-008	506	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000465450.2	CAPN13-007	572	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

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Summary

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