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Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: CPSF4 ENSG00000160917

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Description

cleavage and polyadenylation specific factor 4, 30kDa [Source:HGNC Symbol;Acc:2327]

Gene Synonyms

CPSF30, NAR, NEB1

Location

Chromosome 7: 99,036,545-99,054,994 forward strand.

GRCh37:CM000669.1

About this gene

This gene has 13 transcripts (splice variants) and 2 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000292476.5	CPSF4-003	1691	269aa	ENSP00000292476.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS5664	C9K0K2 O95639	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000436336.2	CPSF4-001	1738	244aa	ENSP00000395311.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS47652	B7Z7B0 C9K0K2 O95639	NM_006693.2	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000451876.1	CPSF4-002	1644	211aa	ENSP00000396060.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JEV9	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000441580.1	CPSF4-004	942	191aa	ENSP00000402224.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B7Z7B0 C9K0K2	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000412686.1	CPSF4-010	745	112aa	ENSP00000401150.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9K0K2	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000452047.1	CPSF4-007	687	229aa	ENSP00000392584.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H7C016	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000440514.1	CPSF4-011	578	193aa	ENSP00000415188.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000430038.1	CPSF4-005	735	44aa	ENSP00000401496.1	Nonsense mediated decay		F8WEL7	-	-
ENST00000471455.1	CPSF4-008	569	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000465132.1	CPSF4-009	927	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000484112.1	CPSF4-006	825	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000469897.1	CPSF4-012	689	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000482251.2	CPSF4-013	574	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

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Summary

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