Description
regulatory factor X, 5 (influences HLA class II expression) [Source:HGNC Symbol;Acc:9986]
Location
Chromosome 1: 151,313,116-151,319,833 reverse strand.
GRCh37:CM000663.1
About this gene
This gene has 22 transcripts (splice variants), 1 paralogue and is associated with 2 phenotypes.
Transcripts
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|---|
| ENST00000290524.4 | RFX5-001 | 3576 | 616aa | ENSP00000290524.4 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS994 | F2Z2G0 F6R6G4 F6S3S0 F6TYI9 F6U6P3 F6UE82 F6X8N2 F6X9D6 F8W689 P48382 Q9UG77 | NM_001025603.1 | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000368870.2 | RFX5-020 | 2459 | 616aa | ENSP00000357864.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS994 | F2Z2G0 F6R6G4 F6S3S0 F6TYI9 F6U6P3 F6UE82 F6X8N2 F6X9D6 F8W689 P48382 Q9UG77 | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000452671.2 | RFX5-002 | 2355 | 616aa | ENSP00000389130.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS994 | F2Z2G0 F6R6G4 F6S3S0 F6TYI9 F6U6P3 F6UE82 F6X8N2 F6X9D6 F8W689 P48382 Q9UG77 | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000452513.2 | RFX5-201 | 2100 | 576aa | ENSP00000398388.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | B7Z848 F2Z2G0 Q9UG77 | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, | |
| ENST00000392746.3 | RFX5-008 | 2056 | 596aa | ENSP00000376502.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | F2Z2G0 F6R6G4 F6S3S0 F6TYI9 F6U6P3 F6UE82 F6X8N2 F6X9D6 F8W689 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000450506.1 | RFX5-003 | 903 | 184aa | ENSP00000398666.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | F2Z2G0 F6R6G4 F6S3S0 F6TYI9 F6UE82 F6X8N2 F6X9D6 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000422595.1 | RFX5-004 | 902 | 229aa | ENSP00000399095.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | F2Z2G0 F6R6G4 F6S3S0 F6TYI9 F6U6P3 F6UE82 F6X8N2 F6X9D6 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000436637.1 | RFX5-010 | 765 | 235aa | ENSP00000390769.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | H0Y4B4 | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, | |
| ENST00000437327.1 | RFX5-011 | 597 | 105aa | ENSP00000413153.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | F2Z2G0 F6S3S0 F6X8N2 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000430227.1 | RFX5-012 | 585 | 123aa | ENSP00000387618.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | F2Z2G0 F6S3S0 F6TYI9 F6X8N2 F6X9D6 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000412774.1 | RFX5-005 | 562 | 117aa | ENSP00000396810.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | F2Z2G0 F6S3S0 F6TYI9 F6X8N2 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000436271.1 | RFX5-021 | 545 | 96aa | ENSP00000390720.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | F2Z2G0 F6S3S0 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000458484.1 | RFX5-009 | 537 | 165aa | ENSP00000409187.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | F2Z2G0 F6R6G4 F6S3S0 F6TYI9 F6X8N2 F6X9D6 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000444392.1 | RFX5-014 | 596 | 50aa | ENSP00000412900.1 | Nonsense mediated decay | F2Z2G0 | - | - | |
| ENST00000435314.1 | RFX5-018 | 583 | 42aa | ENSP00000415012.1 | Nonsense mediated decay | F8WDU3 | - | - | |
| ENST00000452456.1 | RFX5-013 | 567 | 50aa | ENSP00000405067.1 | Nonsense mediated decay | F2Z2G0 | - | - | |
| ENST00000421986.1 | RFX5-017 | 558 | 44aa | ENSP00000399372.1 | Nonsense mediated decay | F8WFE4 | - | - | |
| ENST00000478564.1 | RFX5-019 | 555 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000494217.1 | RFX5-016 | 588 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000479681.1 | RFX5-015 | 583 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000475144.1 | RFX5-007 | 519 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000469513.1 | RFX5-006 | 396 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - |
