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Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Paralogues
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
Ontologies
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Genetic Variation
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Pathway
Molecular interactions
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ID History
- Gene history

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Gene: VPS54 ENSG00000143952

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Description

vacuolar protein sorting 54 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:18652]

Gene Synonyms

HCC8, SLP-8p, VPS54L, WR, hVps54L

Location

Chromosome 2: 64,119,280-64,246,206 reverse strand.

GRCh37:CM000664.1

About this gene

This gene has 4 transcripts (splice variants).

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000272322.4	VPS54-001	3463	977aa	ENSP00000272322.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS33208	Q9P1Q0	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000409558.4	VPS54-002	4337	965aa	ENSP00000386980.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS46302	Q9P1Q0	NM_016516.2	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000354504.3	VPS54-003	3594	824aa	ENSP00000346499.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q9P1Q0	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000416400.1	VPS54-004	1277	81aa	ENSP00000414725.2	Nonsense mediated decay		Q9P1Q0	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

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Summary

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